New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1989774335 (0.920)4 (0.010) 3/240 NT 1.2% coding (478/1128 nt) queG Epoxyqueuosine reductase
?USA300TCH1516_ALE = 1989799 342 (1.020)coding (453/1128 nt) queG Epoxyqueuosine reductase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 420 total aligned reads displayed.

ATTTCCAACTAATGCACTTGTTGGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTA  >  USA300TCH1516_ALE/1989634‑1989914
                                                                                                                                            |                                                                                                                                             
aTTTCCAACTAATGCACTTGTTGGACAACGATCAACACAAACTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATT                                                                                                                                               <  1:3438288‑M1/141‑1 (MQ=255)
   tCCAACTAATGCACTTGTTGGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAATAGTTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATtgat                                                                                                                                            >  1:1019029/1‑141 (MQ=255)
   tCCAACTAATGCACTTGTTGGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATtgat                                                                                                                                            <  2:2968771/141‑1 (MQ=255)
    ccAACTAATGCACTTGTTGGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATtgatg                                                                                                                                           <  1:3311845/141‑1 (MQ=255)
    ccAACTAATGCACTTGTTGGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATtgatg                                                                                                                                           <  2:3928985/141‑1 (MQ=255)
    ccAACGAATTCATTTTTTGTACAACGATCAACACAAATTGTATAATCCCAGCAATTAGTTAATAATGGATAATCAGGTTCAAAAGGTATACTCTCTAACATTTCACCTAGGTATGTCCATGTTCCTAGTTTAGGATtgatg                                                                                                                                           <  2:4054265/141‑1 (MQ=255)
     cAACTAATGCACTTGTTGGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATtgataa                                                                                                                                          >  1:2366652/1‑139 (MQ=255)
     cAACTAATGCACTTGTTGGACAACGATCAACACAAATCGTACAATCACCACAGATATCTAATAATGGATCATCAGGTTCAAAAGATATACTCACTAACATTTCACCGAGGTATCTCCCTGTTCCTAGTTTATGATtcatga                                                                                                                                          >  2:844257/1‑141 (MQ=255)
      aaCTAATGCACTTGTTTGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGAc                                                                                                                                         <  2:2070673/141‑1 (MQ=255)
      aaCTAATGCACTTGTTGGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGAc                                                                                                                                         <  1:1461296/141‑1 (MQ=255)
       aCTAATGCACTTGTTGGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACa                                                                                                                                        >  1:1520450/1‑141 (MQ=255)
          aaTGCACTTGTTGGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAg                                                                                                                                     <  2:1925276/141‑1 (MQ=255)
          aaTGCACTTGTTGGACAACGATCAACACAAATTATAACCAGAATATATCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAg                                                                                                                                     <  2:1980448/141‑1 (MQ=255)
          aaTGCACTTGTTAAACAACAATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTTTACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAg                                                                                                                                     <  2:4124014/141‑1 (MQ=255)
            tGCACTTGTTGGACAACGATCAACACAAATTGTACAATCCCCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGcc                                                                                                                                   <  1:4152118/141‑1 (MQ=255)
              cgcTTGTTGGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCAt                                                                                                                                 <  1:1619549/139‑1 (MQ=255)
                  tgttgGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATGAGGTTCAAAAGGTATACTGACTAACATATCACCGAGGTATCTCAATTCTCCTAGCTTAGGATTGATGACAAAGCCATGAcc                                                                                                                             >  2:3314574/1‑140 (MQ=255)
                   gttgGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGa                                                                                                                            >  1:153960/1‑141 (MQ=255)
                    ttgGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGAc                                                                                                                           <  1:1838344/141‑1 (MQ=255)
                    ttgGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATCACAAAGCCATTACGAc                                                                                                                           >  2:2270536/1‑141 (MQ=255)
                    ttgGACAACGATCAACACAAACTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGAc                                                                                                                           <  2:1030844/141‑1 (MQ=255)
                     tgGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAACCCCTTagcgcc                                                                                                                          >  1:2045355/1‑136 (MQ=255)
                     tgGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAAAATACCACCTATGTATGTAACTAAAACATTATAAGGATTGATGACAAAGCCATTACGAcc                                                                                                                          >  1:2781035/1‑141 (MQ=255)
                       gACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACcaa                                                                                                                        <  1:2998945/141‑1 (MQ=255)
                       gACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACcaa                                                                                                                        >  1:973548/1‑141 (MQ=255)
                             gATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTtgttggtcgtaatggctttgtcatcaatc                                                                                                                  <  1:2858159‑M1/141‑30 (MQ=255)
                              aTCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAaatcc                                                                                                                 >  1:764727‑M2/1‑136 (MQ=255)
                               tCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTtgttggtcgtaatggctttgtcatcaatcct                                                                                                                <  2:1688629‑M1/141‑32 (MQ=255)
                                   cacaAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAaatcctaaac                                                                                                            <  2:1345951‑M2/141‑11 (MQ=255)
                                   cacaAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATATCCAAGTTGCGAGTTTAGGATTGATGACAAAGCCATTACGACCAACAaatcctaaac                                                                                                            <  2:3132952‑M2/141‑11 (MQ=255)
                                    acaAATTGTACAATCACCACAGGTAGCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAAcc                                                                                                           <  2:702416/141‑1 (MQ=255)
                                      aaaTTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTg                                                                                                         >  1:3137979/1‑141 (MQ=255)
                                      aaaTTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTg                                                                                                         <  2:1117506/141‑1 (MQ=255)
                                       aaTTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGc                                                                                                        <  1:3875332/141‑1 (MQ=255)
                                        aTTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGcc                                                                                                       >  1:4385846/1‑140 (MQ=255)
                                          tGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGAATTGATGACAAAACCATTACGACCAACAAATCCTAAACCCGCAca                                                                                                     >  2:3368720/1‑140 (MQ=255)
                                            tACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGtt                                                                                                   <  2:3549224/141‑1 (MQ=255)
                                             aCAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAAGCTGCACGttt                                                                                                  >  1:4008043/1‑140 (MQ=255)
                                             aCAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTc                                                                                                  >  1:2114074/1‑141 (MQ=255)
                                             aCAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTc                                                                                                  >  1:3637509/1‑141 (MQ=255)
                                             aCAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTACACGTTc                                                                                                  >  1:1322835/1‑141 (MQ=255)
                                               aaTCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATGTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTg                                                                                                <  2:3156298/141‑1 (MQ=255)
                                                    ccacAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACt                                                                                           <  2:3496889/141‑1 (MQ=255)
                                                      ccagatttCTAATAGTGGATCATCATGTTAAAGTTGTATACTGACTAACATGTCACCGAGGTATGTCCAGGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑c                                                                                        <  2:1774374/134‑1 (MQ=255)
                                                      acaGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACTAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑c                                                                                        <  2:3750756/141‑1 (MQ=255)
                                                      acaGCTAGTTAAAAATGGATCATCAGGTTCAAAATGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑c                                                                                        <  2:2500016/141‑1 (MQ=255)
                                                       caGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑cc                                                                                       >  1:3746419/1‑141 (MQ=255)
                                                        aGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑ccc                                                                                      >  1:3369568/1‑141 (MQ=255)
                                                        aGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑ccc                                                                                      >  1:1959734/1‑141 (MQ=255)
                                                                aataatGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGat                                                                              <  1:3810732/141‑1 (MQ=255)
                                                                aataatGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGat                                                                              <  1:815775/141‑1 (MQ=255)
                                                                 ataatGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGata                                                                             >  1:4247983/1‑141 (MQ=255)
                                                                     tGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATac                                                                         <  2:3427854/141‑1 (MQ=255)
                                                                      ggATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTCCTACTG‑CCCTATCTCACAATacc                                                                        >  2:1229290/1‑140 (MQ=255)
                                                                          catcaGGTGCAAAATGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCATGTTCTGCTACTG‑CCCTATCTGATAATACACCCg                                                                    <  2:2544145/141‑1 (MQ=255)
                                                                           atcaGGTTCAAAAGGTATACTGACTAAAAATCCAAAAGCTTATGTCCATGTTCCTAGTTTAGGATTGATGAAAAAGCCATTACGACCAACAAATCCTCAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACACgc                                                                   >  2:3605239/1‑140 (MQ=255)
                                                                            tcaGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCTTAAACCTGCACGTTCTGCTACTG‑CCCTCTCCGAtactacccacctc                                                                  >  2:896734/1‑134 (MQ=255)
                                                                             caGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTAt                                                                 >  1:4088972/1‑141 (MQ=255)
                                                                              aGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGCTGACAAAGCCATTACGTCCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATACTCCACCCGTATc                                                                >  1:1679084/1‑141 (MQ=255)
                                                                               ggTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCt                                                               >  1:2576117/1‑141 (MQ=255)
                                                                                gTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTa                                                              <  1:2662723/141‑1 (MQ=255)
                                                                                    aaaaTGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTAccgt                                                          <  1:499555/141‑3 (MQ=255)
                                                                                      aaGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTACACGTTCTGCTACTC‑CACCAACTTATAATCCACCCGTAACTACCATat                                                        >  2:2150512/1‑140 (MQ=255)
                                                                                              cTGAGTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAgatttgatt                                                >  2:4384591/1‑141 (MQ=255)
                                                                                              cTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATCgatttgatt                                                >  1:1262213/1‑141 (MQ=255)
                                                                                              cTGACTAACATTTCACCGAGGTATGTACATGTTCCTAGTTTAGGATTtgttggtcgtaatggctttgtcatcaatactaaactaggaacatggacatacctctgtgaaatgttaaccagtataatgattgaacctgatgac                                                 >  2:4020232‑M1/1‑47 (MQ=255)
                                                                                                gACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTc                                              >  1:1380935/1‑141 (MQ=255)
                                                                                                     aCATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATCATACACCCGTATCTACCATAGATTTGATTTCAACAt                                         <  2:1403873/141‑1 (MQ=255)
                                                                                                     aCATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACAt                                         >  1:3503980/1‑141 (MQ=255)
                                                                                                      cATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATc                                        >  1:1200329/1‑141 (MQ=255)
                                                                                                        tttCACCGAGGTATGTCCATAAACCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACATGCACATTCTGCTACTG‑CCCTATCTGATAATACACACGTATATACCATAGATTTGATTTCAACATCTg                                      >  2:548705/1‑141 (MQ=255)
                                                                                                         ttCACCGATGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTgg                                     <  2:3203615/141‑1 (MQ=255)
                                                                                                         ttCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTgg                                     >  1:3796547/1‑141 (MQ=255)
                                                                                                         ttCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTgg                                     >  2:3073671/1‑141 (MQ=255)
                                                                                                         ttCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGCATCTACCATAGATTTGATTTCAACATCTgg                                     >  2:2797145/1‑141 (MQ=255)
                                                                                                            aCCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAAc                                  <  2:130477/141‑1 (MQ=255)
                                                                                                               gAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACttt                               <  1:691053/141‑1 (MQ=255)
                                                                                                                aGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTa                              >  1:3178192/1‑141 (MQ=255)
                                                                                                                   tctttctaTGTTCCTAGTTTATGATTGATGACAAAGCTCTTACGGCCAACTTATCCTACACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATCCACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTCAGAt                           <  2:1528668/134‑1 (MQ=255)
                                                                                                                     tGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATATACCATAGATTTGATTTCAACATCTGGAACTTTAGATTc                         >  1:2307570/1‑141 (MQ=255)
                                                                                                                       tCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCaa                       >  1:2817602/1‑141 (MQ=255)
                                                                                                                         cATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATa                     >  1:2481291/1‑141 (MQ=255)
                                                                                                                            gTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAAt                  <  1:939817/141‑1 (MQ=255)
                                                                                                                              tCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTTCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGc                <  2:2302890/141‑1 (MQ=255)
                                                                                                                              tCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGc                >  1:3678800/1‑141 (MQ=255)
                                                                                                                                cTAGTTTAGTATTGATGACAAAGCGAGTACGACCAACAAATCCTATACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAg              <  2:2865961/141‑1 (MQ=255)
                                                                                                                                cTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAg              <  1:4165536/141‑1 (MQ=255)
                                                                                                                                 tggattAGGAGTGAAGGAAGAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGc             <  2:2378804/137‑1 (MQ=255)
                                                                                                                                  tggttaggGTTtgttcgtcgtaatggctttgtcatcaatcctaaactaggaacatgtacatacctcggtgaaatgttagtcagtataccttttgatcctgattattcattattagatagctggggtgattgtacaatttgt             <  2:51658‑M1/138‑131 (MQ=255)
                                                                                                                                  actttAGGATTGATGACACTGCCATTACGACTAACAAATCCTAACCCTGCACGTTCAGCTATTG‑GCGTATCTTATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCt            <  2:3820275/139‑1 (MQ=255)
                                                                                                                                      tAGGATTtgttggtcgtaatggctttgtcatcaatcctaaactaggaacatggacatacctcggtgaaatgttagtcagcataccttttgaacctgatgatccattagtagatagcggtggtgattgtacaatttgtgttg         >  1:2212194‑M1/1‑7 (MQ=255)
                                                                                                                                      tAGGATTGATGACAAAGCCATTACGCCCACCAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACa        <  1:304393/141‑1 (MQ=255)
                                                                                                                                        ggATTGATGACAACGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATg      <  1:2686097/141‑1 (MQ=255)
                                                                                                                                        ggATTGATGACAAATCCATTACCACCAACAAATCCTAAGCCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATg      <  2:3652109/141‑1 (MQ=255)
                                                                                                                                        ggATTGATGACAAAGCCATTACGACCAACAAATCCTAAGCCTGCACGTTCTGCTAATGAAAATAGC‑CTGAATGCACACGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATg      <  1:3230354/141‑1 (MQ=255)
                                                                                                                                        ggATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCACTAAATGCAGCTAACATg      >  2:4225984/1‑141 (MQ=255)
                                                                                                                                         gATTGGTGACAAAGCCATTACGACCAACAAACCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTCCTATTCATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGt     <  1:637574/141‑1 (MQ=255)
                                                                                                                                            ttgttggtcgtaatggctttgtcatcaatcctaaactaggaacatggacatacctcggtgaaatgttagtcagtataccttttgaacctgatgatccattattagatagctgtggtgattgtacaatttgtgttgatcgtt   >  1:1753257‑M1/1‑1 (MQ=255)
                                                                                                                                            tgatgaCAAAGCCATTTCGACCAACAAATCCTAACCCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCTTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTa  <  2:1629137/141‑1 (MQ=255)
                                                                                                                                            tgatgaCAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTAAATAAATGCAGCTAACATGTCTa  >  1:592539/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                             
ATTTCCAACTAATGCACTTGTTGGACAACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCTAAACCTGCACGTTCTGCTACTG‑CCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTA  >  USA300TCH1516_ALE/1989634‑1989914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.