New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1989774335 (0.920)4 (0.010) 3/240 NT 1.2% coding (478/1128 nt) queG Epoxyqueuosine reductase
?USA300TCH1516_ALE = 1989799 342 (1.020)coding (453/1128 nt) queG Epoxyqueuosine reductase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 392 total aligned reads displayed.

AACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACGCATAATTGTATGATA  >  USA300TCH1516_ALE/1989660‑1989939
                                                                                                                                           |                                                                                                                                             
      cAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAGGCAATTACGACCAACAaatccta                                                                                                                                        <  1:344680‑M2/141‑8 (MQ=255)
        acacAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAaatcctaaa                                                                                                                                      <  1:234336‑M2/141‑10 (MQ=255)
         cacaAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAaatcctaaac                                                                                                                                     <  2:1345951‑M2/141‑11 (MQ=255)
           caAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGTTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCt                                                                                                                                  <  2:3640189/141‑1 (MQ=255)
            aaaTTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTg                                                                                                                                 >  1:3137979/1‑141 (MQ=255)
             taTTGTACAATCACCACTGCTATCTAATAATGGATCATGAGGTTCAAAAGGTAGACTGACTAACATTTCACCGAGGTATGTCCAGGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGc                                                                                                                                <  2:395877/140‑1 (MQ=255)
             aaTTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCGCTGCGGATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGc                                                                                                                                <  1:1434997/141‑1 (MQ=255)
             aaTTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGc                                                                                                                                <  1:3875332/141‑1 (MQ=255)
               ttGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACCAATCAC‑AAACCTGCAc                                                                                                                              >  2:2954576/1‑141 (MQ=255)
                tGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGAATTGATGACAAAACCATTACGACCAACAAATCCT‑AAACCCGCAca                                                                                                                             >  2:3368720/1‑140 (MQ=255)
                   aCAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAAGCTGCACGttt                                                                                                                          >  1:4008043/1‑140 (MQ=255)
                   aCAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTc                                                                                                                          <  1:2110675/141‑1 (MQ=255)
                   aCAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACAACCAACACATCCT‑AAACCTGCACGttt                                                                                                                          >  1:2911438/1‑140 (MQ=255)
                     aaTCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCAGCGAAGCATATCCAGGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTg                                                                                                                        <  1:1032209/141‑1 (MQ=255)
                     aaTCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTg                                                                                                                        <  2:2112151/141‑1 (MQ=255)
                     aaTCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTg                                                                                                                        <  2:3203442/141‑1 (MQ=255)
                     aaTCACCACAGCTATCTAATAATGGACCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTg                                                                                                                        <  1:1939234/141‑1 (MQ=255)
                      aTCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGc                                                                                                                       <  1:2262909/141‑1 (MQ=255)
                      aTCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGc                                                                                                                       >  1:30618/1‑141 (MQ=255)
                            acaGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGc                                                                                                                 <  1:4255512/141‑1 (MQ=255)
                             ctgCTATCTAATGATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGTATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGcc                                                                                                                <  2:956186/139‑1 (MQ=255)
                             caGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGCCCACCAAATCAT‑AAACCTGCACGTTCTGCTACTGcc                                                                                                                >  2:487200/1‑141 (MQ=255)
                             caGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGcc                                                                                                                >  1:3746419/1‑141 (MQ=255)
                             caGCCATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGcc                                                                                                                <  1:1184147/141‑1 (MQ=255)
                              aGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGccc                                                                                                               >  1:3369568/1‑141 (MQ=255)
                               gCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCt                                                                                                              <  2:873092/141‑1 (MQ=255)
                                 tATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGTCTAACATTTCACCGAAGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGATCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTAt                                                                                                            <  2:3466450/141‑1 (MQ=255)
                                     taataaTGGATCATCAGGTTCAAAAGGTATACTGACTAACCTTTCACCGAGGTATGTCCATGTTACTAGCTTATGTTTGATGACAAATCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGa                                                                                                        >  1:2784192/1‑141 (MQ=255)
                                      aataatGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGat                                                                                                       <  1:3810732/141‑1 (MQ=255)
                                      aataatGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGat                                                                                                       <  1:244490/141‑1 (MQ=255)
                                      aataatGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGat                                                                                                       <  1:815775/141‑1 (MQ=255)
                                           ttgaccatcaGGTGCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATac                                                                                                  <  2:1258791/136‑1 (MQ=255)
                                           tGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATac                                                                                                  <  2:3427854/141‑1 (MQ=255)
                                              atcaccAGGTTCCAAATTTTTACTGATTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAaatcctaaactaggaacatggacatacctcggtgaaatgttagtcag                                                                                                >  2:2851683‑M2/1‑94 (MQ=255)
                                               tcatcaGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AACCCTGCACGTTCTGCTACTGCCCTATCTGATAATACAccc                                                                                              <  1:96784/141‑1 (MQ=255)
                                                catcaGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCg                                                                                             <  2:3703394/141‑1 (MQ=255)
                                                     ggTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCt                                                                                        >  1:678340/1‑141 (MQ=255)
                                                     ggTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCt                                                                                        >  1:2576117/1‑141 (MQ=255)
                                                      gTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCGGTATCTa                                                                                       >  1:3656417/1‑141 (MQ=255)
                                                          aaaaTGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTAccgt                                                                                   <  1:499555/141‑3 (MQ=255)
                                                                   aCTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACACGTATCTACCATAgatttgct                                                                          >  2:4359613/1‑139 (MQ=255)
                                                                        atAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAATGCCTAAAACCCCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCaa                                                                     <  1:3224890/140‑1 (MQ=255)
                                                                           aCATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATCATACACCCGTATCTACCATAGATTTGATTTCAACAt                                                                  <  2:1403873/141‑1 (MQ=255)
                                                                           aCATTTCACCGAGGTATGTCCATGTTCCTAGCTTAGGATTGATGACAAAGCCATTACGACCAACGAATTCT‑AAATCTACACATCCATCTACATCCCTATCTGATAATACACCCCTATCTACCATCGCTTTAATTTCAAcct                                                                  >  2:2171389/1‑139 (MQ=255)
                                                                              tttCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTg                                                               <  1:263413/141‑1 (MQ=255)
                                                                              tttCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTg                                                               >  2:2416790/1‑141 (MQ=255)
                                                                              tttCACCGAAGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTg                                                               <  2:3020153/141‑1 (MQ=255)
                                                                               ttCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTgg                                                              >  1:3796547/1‑141 (MQ=255)
                                                                                tCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGa                                                             >  1:1603931/1‑141 (MQ=255)
                                                                                  aCCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACCCCCGTAACTCCCGTTGCTTTGCTTTCCACATCTGGAAc                                                           >  2:1090152/1‑141 (MQ=255)
                                                                                  aCCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAAc                                                           >  1:1346908/1‑141 (MQ=255)
                                                                                     gAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACttt                                                        <  2:1860386/141‑1 (MQ=255)
                                                                                      aGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACAcc                                                                                               >  2:3803730/1‑101 (MQ=255)
                                                                                      aGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTa                                                       >  1:3311123/1‑141 (MQ=255)
                                                                                      aGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTa                                                       >  1:3178192/1‑141 (MQ=255)
                                                                                         tctttctaTGTTCCTAGTTTATGATTGATGACAAAGCTCTTACGGCCAACTTATCCT‑ACACCTGCACGTTCTGCTACTGCCCTATCTGATAATCCACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTCAGAt                                                    <  2:1528668/134‑1 (MQ=255)
                                                                                         tATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGAt                                                    >  2:357269/1‑141 (MQ=255)
                                                                                         gaTGTCCATGTTCCGAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGAt                                                    <  1:1727179/140‑1 (MQ=255)
                                                                                           tGTCCATGTTCGTAGTTTAGGATTGATGACAAAGCCATTACGACCTACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTc                                                  <  2:230148/141‑1 (MQ=255)
                                                                                             tcaaTGTGCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AGACCGGCACGTTCTGCCACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCaa                                                <  2:2001381/138‑1 (MQ=255)
                                                                                             tCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCaa                                                >  1:2817602/1‑141 (MQ=255)
                                                                                             tCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCaa                                                <  2:1940006/141‑1 (MQ=255)
                                                                                              ccATGTTCCTAGTTTAGTATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATATCACACCCTTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAAt                                               <  2:4077248/141‑1 (MQ=255)
                                                                                              ccATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAAt                                               >  1:2998452/1‑141 (MQ=255)
                                                                                               cATGTTCCTAGTTTAGGATTGATGACAAAGCGATTACGACCAACAAATCCT‑AAACCTGAACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATTGATTGGATTTCAACATCTGGAACTTTCGATTCaaaa                                              >  2:4201230/1‑139 (MQ=255)
                                                                                                      cTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAg                                       <  1:4165536/141‑1 (MQ=255)
                                                                                                       tAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGc                                      <  1:2025969/141‑1 (MQ=255)
                                                                                                        aGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGCAAGTTAGATACCATAAAAGCACCt                                     >  2:3527856/1‑141 (MQ=255)
                                                                                                        aGTTTAGGATTGATGACAAACCGGTTACGACCAACAAATAGTAAAACCTGGGATTTC‑AATAACACATTAGCTAATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCt                                     >  2:3147967/1‑141 (MQ=255)
                                                                                                        aGTTTAGGAGTGATGACAAAGACATTATGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCt                                     <  2:4026796/141‑1 (MQ=255)
                                                                                                            tAGGATTGATGACTAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACa                                 <  1:1647837/141‑1 (MQ=255)
                                                                                                             aGGATTGATGACAAAGCCATTACGACCAACAaatcctaaactaggaacatggacatacctcggtgaaatgttagtcagtataccttttgaacctgatgatccattattagatagctgtggtgattgtacaatttgtgttga                                 <  2:1688629‑M2/141‑111 (MQ=255)
                                                                                                              ggATTGATGACAACGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATg                               <  1:2686097/141‑1 (MQ=255)
                                                                                                              ggATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATg                               >  1:1515658/1‑141 (MQ=255)
                                                                                                               gATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGt                              <  1:1313007/141‑1 (MQ=255)
                                                                                                                  tgatgaCAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTAAATAAATGCAGCTAACATGTCTa                           >  1:592539/1‑141 (MQ=255)
                                                                                                                   gatgaCAACGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTaa                          >  2:2722264/1‑141 (MQ=255)
                                                                                                                        cAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTCTCTTATAATCCACCCCAAGCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGtt                     >  1:4389469/1‑141 (MQ=255)
                                                                                                                        cAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGCTAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCCATAACTGCAGCTAACATCACTAATCGtt                     >  2:51948/1‑141 (MQ=255)
                                                                                                                        cAAAGCCATTACGACCAACAAATCCT‑AAACCTGAACGTTCTGCTAATGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAAATTCAATAAATGCATCTAACATGTCTAATGGtt                     >  2:69475/1‑141 (MQ=255)
                                                                                                                         aaaGCCATTACGACCAACAAATCCT‑CAACCTGCTCGTTCTGCTACTGCCCTATCTGATAATCCACCCGTATCTACCATACATTTTATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGttt                    >  2:1145896/1‑141 (MQ=255)
                                                                                                                         aaaGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGttt                    >  1:4189250/1‑141 (MQ=255)
                                                                                                                          aaGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCAAATTGtttt                   >  2:3086126/1‑140 (MQ=255)
                                                                                                                            gCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACg                 <  1:733186/141‑1 (MQ=255)
                                                                                                                            gCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATCTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACg                 >  2:15860/1‑141 (MQ=255)
                                                                                                                            gCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCCACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAACAAATGCAGCTAACATGTCTAATCGTTTAcc                 >  2:2569261/1‑140 (MQ=255)
                                                                                                                             ccATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACGc                <  1:4123869/141‑1 (MQ=255)
                                                                                                                               aTTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACTTGTCTAATCGTTTACGCAt              >  1:3910728/1‑141 (MQ=255)
                                                                                                                               aTTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACGCAt              <  1:3569039/141‑1 (MQ=255)
                                                                                                                                ttACGACCCACACGTCCG‑ATACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACGCATa             <  1:370144/141‑1 (MQ=255)
                                                                                                                                ttACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACGCATa             <  2:2500136/141‑1 (MQ=255)
                                                                                                                                ttACGACCAACAAATACT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTAGCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATATATGCAGCTAACATGTCTAATCGTTTACGCATa             <  2:3898760/141‑1 (MQ=255)
                                                                                                                                 tACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACGCATaa            >  2:1044815/1‑141 (MQ=255)
                                                                                                                                  aCGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACTCATAAt           >  1:1812880/1‑141 (MQ=255)
                                                                                                                                  aCGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACGCATAAt           >  2:3243149/1‑141 (MQ=255)
                                                                                                                                  aCGACCAACAAATCCT‑AAACCTGAACGTTCTGCTATTGCACTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACGCATAAt           >  1:859133/1‑141 (MQ=255)
                                                                                                                                     aCCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACGCATAATTGt        >  1:4085424/1‑141 (MQ=255)
                                                                                                                                     aCCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACGCATAATTGt        <  1:1240851/141‑1 (MQ=255)
                                                                                                                                       caacaaATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACGCATAATTGTAt      <  2:576715/141‑1 (MQ=255)
                                                                                                                                         acaaATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACGCATAAtcgaataa    >  2:2345777/1‑134 (MQ=255)
                                                                                                                                           |                                                                                                                                             
AACGATCAACACAAATTGTACAATCACCACAGCTATCTAATAATGGATCATCAGGTTCAAAAGGTATACTGACTAACATTTCACCGAGGTATGTCCATGTTCCTAGTTTAGGATTGATGACAAAGCCATTACGACCAACAAATCCT‑AAACCTGCACGTTCTGCTACTGCCCTATCTGATAATACACCCGTATCTACCATAGATTTGATTTCAACATCTGGAACTTTAGATTCAATAAATGCAGCTAACATGTCTAATCGTTTACGCATAATTGTATGATA  >  USA300TCH1516_ALE/1989660‑1989939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.