| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | CP000731 | 6,552 | +TCTCCAGGCACTTGTGCATATTCTGAAA | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 6552 | 0 (0.000) | 38 (0.890) +TCTCCAGGCACTTGTGCATATTCTGAAA |
31/212 | 0.3 | 100% | intergenic (+1069/‑419) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| ? | CP000731 | 6553 = | 0 (0.000) | intergenic (+1070/‑418) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator | |||||
ATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTC > CP000731/6421‑6681 | aTTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtct < 2:81805‑M1/135‑4 (MQ=255) tttCAGGTTGTGCTTTGTTCTTCATTCCATATTTTTCTAGATCAAAAATTGATAATACTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctc > 1:55035‑M1/1‑131 (MQ=255) tttCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTACTTGGGGAATAGGAACAATCCACtctc > 1:94034‑M1/1‑131 (MQ=255) tCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGTCATTTCTTGGGGAATAGGAACAATCCACtctcca < 1:106575‑M1/135‑7 (MQ=255) aGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAAGAACAATCCACtctccagg > 2:124102‑M1/1‑127 (MQ=255) gtgATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCGACtctccaggcactt > 1:84553‑M1/1‑122 (MQ=255) tGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATATACATTTCTTTTTGAATAGGAACAATCCACtctccaggcacttgtgcat < 1:127484‑M1/135‑20 (MQ=255) gATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATATACTTTTCTTGGTGAATAGGAACAATCCACtctccaggcacttgtgcata < 1:133745‑M1/135‑21 (MQ=255) ttcattcCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattct > 1:128357‑M1/1‑111 (MQ=255) tcattcCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctg > 2:177891‑M1/1‑110 (MQ=255) cattcCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTTTTTTGTTTTAGTAACAATCCACtctccaggcacttgtgcatattctga < 1:117498‑M1/135‑27 (MQ=255) tcCATATTTTTCTAGTTCAAAAATTGATAATGCTACCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaa > 1:170911‑M1/1‑106 (MQ=255) ccATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGTCTCTTTAATAGACATTTCTTTGTTAATAGGAACAATCCACtctccaggcacatgtgcatattctgaaaat < 1:41569‑M1/135‑31 (MQ=255) cATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcctattctgaaaatc > 2:69179‑M1/1‑104 (MQ=255) cATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTATGCAATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaaacacttgtgcatattccgaaaatc > 2:138383‑M1/1‑104 (MQ=255) ttttCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACGATAGACTCTTTAATAGACATTTGTTGTGAAATAGGAACAATCCACtctccaggcactggtgcatatacagaaaatccacct > 2:10799‑M1/1‑99 (MQ=255) gTTCAAAAATTGATAATGCTGCCGTACAACAAGCTGTGCTATATACCATAGACTCTTTAATATACATTTCTTTGTGAATATGTACAATCCATtctttaggcacttgtgcatattctgaaaatccacctgtatgtg < 1:89983‑M1/135‑44 (MQ=255) gTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCATTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatcttctgaaaatccacctttatgtg > 1:35941‑M1/1‑92 (MQ=255) tccaaAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAAGAACAATTCACtctccatgcacttgtgcatattctgaaaatccacctgtatgtgt < 1:173615‑M1/133‑45 (MQ=255) aaaTTGATAATGCTGCTGTAATACCGGCTGTGCCATATACCATAGACTCTTTAATCGACATGGTCTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgc < 2:131914‑M1/135‑50 (MQ=255) aaTTGATAATGCTGCCGTAAAACCGGCTTTGCCATATTCCATAGACTCTTTAATATACATTTCTTGTGGAATATTAAAAATCAACtatccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgcc < 1:89752‑M1/135‑51 (MQ=255) gATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGATTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaaca < 2:55035‑M1/135‑55 (MQ=255) gATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTACTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaaca < 2:94034‑M1/135‑55 (MQ=255) aaTGCTGCCGTAAAACCGGCTGTGCCATTTACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatca < 2:187758‑M1/135‑58 (MQ=255) aaTGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctcctggcatttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatca < 1:77165‑M1/135‑58 (MQ=255) aaaCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaact < 1:131595‑M1/135‑70 (MQ=255) ggCTGTGCCATGTACCATACACTCTTTAATAGTCATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattcttaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatac < 2:45372‑M1/135‑75 (MQ=255) ggCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaacgaatac < 1:39378‑M1/135‑75 (MQ=255) tgtgCCATATACCAGAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccaggaactaatacatt < 1:27021‑M1/135‑78 (MQ=255) acataccATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctttatttgtcactccaacatcataaccagtaactaatacattatcgcc < 1:12859‑M1/133‑84 (MQ=255) cgataGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctt < 1:144961‑M1/133‑89 (MQ=255) gACTCTTTAATAGACATTTCTTGGAGAATAGGAACAAACAACtctccaggcacttatgaatattctgaaaatccacctgtatgtgtcacgccaacatcataacaagtaactaatacattatcgccttctttaaac > 1:88468‑M1/1‑42 (MQ=255) tctTTAATAGACATTTCTTGGGGAATAGGAAAAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccaataactaatacattatcgccttctttaaactta > 1:7468‑M1/1‑39 (MQ=255) ctTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtgactaatacattatcgccttctttaaacttat < 2:128357‑M1/135‑98 (MQ=255) aaTAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcatt < 1:177891‑M1/135‑102 (MQ=255) aTTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaactt < 2:170911‑M1/135‑109 (MQ=255) ttCTTGGGGAATAGGAACAATCCACtctccaggcacttatgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttga > 1:209097‑M1/1‑25 (MQ=255) cTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacataatcgccttctttaaactaatcattcgtacttgatt > 2:199223‑M1/1‑23 (MQ=255) gtaataGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaaca < 2:225247‑M1/133‑118 (MQ=255) aTAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaacaata > 1:19337‑M1/1‑15 (MQ=255) aTAGGAACAATCCACtctcaaaggatttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaacaata < 2:84553‑M1/135‑121 (MQ=255) atgaaCAATCCACtctccaggctcttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaacaatacc < 2:31062‑M1/133‑123 (MQ=255) aGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattaacgccttctttaaacttatcattccaacttaattcaacaatccc > 1:57501‑M1/1‑13 (MQ=255) ggAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattttcgccttctttattcttatcattcgaacttgattcaacaatacct < 1:1043‑M1/135‑124 (MQ=255) cAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaacaatacctgcaa > 1:95667‑M1/1‑8 (MQ=255) cAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaacaatacctgcaa > 1:78666‑M1/1‑8 (MQ=255) cAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgagtcaacaatacctgcaa > 2:10973‑M1/1‑8 (MQ=255) cAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtatcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattacacaatacctgcaa > 1:203858‑M1/1‑8 (MQ=255) aTCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaattcattatcgccttctttaaacttatcattcgaactggattcaacaatacctgcaaaa < 1:67812‑M1/135‑130 (MQ=255) | ATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTC > CP000731/6421‑6681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |