| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | CP000731 | 6,552 | +TCTCCAGGCACTTGTGCATATTCTGAAA | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 6552 | 0 (0.000) | 38 (0.890) +TCTCCAGGCACTTGTGCATATTCTGAAA |
31/212 | 0.3 | 100% | intergenic (+1069/‑419) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| ? | CP000731 | 6553 = | 0 (0.000) | intergenic (+1070/‑418) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator | |||||
AAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCT > CP000731/6419‑6682 | tccatatttttctagttcaaaaattgataatgctaccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaa > 1:170911‑M2/135‑135 (MQ=255) ccatatttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagtctctttaatagacatttctttgttaataggaacaatccactctccaggcacatgtgcatattctgaaaAt < 1:41569‑M2/2‑1 (MQ=255) catatttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcctattctgaaaATc > 2:69179‑M2/133‑135 (MQ=255) catatttttctagttcaaaaattgataatgctgccgtaaaaccggctatgcaatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaaacacttgtgcatattccgaaaATc > 2:138383‑M2/133‑135 (MQ=255) ttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatatacgatagactctttaatagacatttgttgtgaaataggaacaatccactctccaggcactggtgcatatacagaaaATCCACCt > 2:10799‑M2/128‑135 (MQ=255) gttcaaaaattgataatgctgccgtacaacaagctgtgctatataccatagactctttaatatacatttctttgtgaatatgtacaatccattctttaggcacttgtgcatattctgaaaATCCACCTGTAtgtg < 1:89983‑M2/15‑1 (MQ=255) gttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactcattaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatcttctgaaaATCCACCTTTAtgtg > 1:35941‑M2/121‑135 (MQ=255) tccaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataagaacaattcactctccatgcacttgtgcatattctgaaaATCCACCTGTATgtgt < 1:173615‑M2/16‑1 (MQ=255) aaattgataatgctgctgtaataccggctgtgccatataccatagactctttaatcgacatggtctggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGc < 2:131914‑M2/21‑1 (MQ=255) aattgataatgctgccgtaaaaccggctttgccatattccatagactctttaatatacatttcttgtggaatattaaaaatcaactatccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGcc < 1:89752‑M2/22‑1 (MQ=255) gataatgctgccgtaaaaccggctgtgccatataccatagattctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAca < 2:55035‑M2/26‑1 (MQ=255) gataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacattacttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAca < 2:94034‑M2/26‑1 (MQ=255) aatgctgccgtaaaaccggctgtgccatttaccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAcatca < 2:187758‑M2/29‑1 (MQ=255) aatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctcctggcatttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAcatca < 1:77165‑M2/29‑1 (MQ=255) aaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACt < 1:131595‑M2/41‑1 (MQ=255) ggctgtgccatgtaccatacactctttaatagtcatttcttggggaataggaacaatccactctccaggcacttgtgcatattcttaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATAc < 2:45372‑M2/46‑1 (MQ=255) ggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACGAATAc < 1:39378‑M2/46‑1 (MQ=255) tgtgccatataccagagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGGAACTAATACAtt < 1:27021‑M2/49‑1 (MQ=255) acataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTTTATTTGTCACTCCAACATCATAACCAGTAACTAATACATTATCGcc < 1:12859‑M2/55‑1 (MQ=255) cgatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCcttctt < 1:144961‑M2/60‑1 (MQ=255) gactctttaatagacatttcttggagaataggaacaaacaactctccaggcacttatgaatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACAAGTAACTAATACATTATCGCCTTCTTTAAAc > 1:88468‑M2/71‑135 (MQ=255) tctttaatagacatttcttggggaataggaaaaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAATAACTAATACATTATCGCCTTCTTTAAACTTa > 1:7468‑M2/68‑135 (MQ=255) ctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTGACTAATACATTATCGCCTTCTTTAAACTTAt < 2:128357‑M2/69‑1 (MQ=255) aatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCAtt < 1:177891‑M2/73‑1 (MQ=255) atttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACtt < 2:170911‑M2/80‑1 (MQ=255) ttcttggggaataggaacaatccactctccaggcacttatgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGa > 1:209097‑M2/54‑135 (MQ=255) cttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATAATCGCCTTCTTTAAACTAATCATTCGTACTTGAtt > 2:199223‑M2/52‑135 (MQ=255) gtaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTcaaca < 2:225247‑M2/89‑1 (MQ=255) ataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATa > 1:19337‑M2/44‑135 (MQ=255) ataggaacaatccactctcaaaggatttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATa < 2:84553‑M2/92‑1 (MQ=255) atgaacaatccactctccaggctcttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATAcc < 2:31062‑M2/94‑1 (MQ=255) aggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTAACGCCTTCTTTAAACTTATCATTCCAACTTAATTCAACAATccc > 1:57501‑M2/42‑135 (MQ=255) ggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTTTCGCCTTCTTTATTCTTATCATTCGAACTTGATTCAACAATACCt < 1:1043‑M2/95‑1 (MQ=255) caatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCaa > 1:95667‑M2/37‑135 (MQ=255) caatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCaa > 1:78666‑M2/37‑135 (MQ=255) caatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGAGTCAACAATACCTGCaa > 2:10973‑M2/37‑135 (MQ=255) caatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTATCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTACACAATACCTGCaa > 1:203858‑M2/37‑135 (MQ=255) atccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATTCATTATCGCCTTCTTTAAACTTATCATTCGAACTGGATTCAACAATACCTGCaaaa < 1:67812‑M2/101‑1 (MQ=255) tccaggcacttgtgcatattctgcaaATCCACCTGTATGTGTCACACCAACATCATAAACAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCTAACTTGATTCAACAATACCTGCAAAATCTATccc > 1:183834‑M2/27‑135 (MQ=255) ttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATTCATTATCGCCTTCTTTAAACTTATTATTCGAATTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCAt < 1:69179‑M2/118‑1 (MQ=255) ttgtgcatatgctgaaaATCCTCCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCTAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCAt < 2:108994‑M2/118‑1 (MQ=255) tgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATa < 2:18441‑M2/119‑1 (MQ=255) catattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGAt > 2:181729‑M2/13‑135 (MQ=255) ttctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAAtc > 2:50974‑M2/9‑135 (MQ=255) tgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGAAACAAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACAAGGAATCATAGGATAATctct > 1:65523‑M2/6‑135 (MQ=255) | AAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCT > CP000731/6419‑6682 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |