New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 2937	577 (1.060)	5 (0.010)	4/250	NT	0.91%	intergenic (‑263/–)	USA300HOU_RS14900/–	hypothetical protein/–
	?	NC_012417	= 2949	534 (1.020)					intergenic (‑275/–)	USA300HOU_RS14900/–	hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

TTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2793‑2937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaacTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATTAA  <  NC_012417/2949‑2810                                                                                                                                                                                                                                                                                                 TTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTG                                                                                                                                                    <  1:105848/141‑1 TTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTG                                                                                                                                                    <  2:70913/141‑1  TTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                                                                   >  2:257531/1‑141  TTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                                                                   <  2:126197/141‑1  TTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                                                                   <  1:363312/141‑1   TAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATATGTTGTTTTTTGAA                                                                                                                                                  >  2:44751/1‑141   TAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTAGAA                                                                                                                                                  >  2:360133/1‑141    AATTTTTAATTTTGTTAATTCGATTTTATTTGATACTCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTAAA                                                                                                                                                 >  2:111817/1‑141    AATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTTATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATTAAAAGTAGAAGGAATAGGTTGTTTTTTGAAA                                                                                                                                                 >  2:388341/1‑141    AATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTTACATTACTTTATTTAGCTTTAGAGGCTCATAAAACGAAGAAGAAATAGGTTATTTTTTGAAA                                                                                                                                                 >  2:124377/1‑141    AATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTGTTTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAA                                                                                                                                                 <  1:251987/141‑1    AATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAA                                                                                                                                                 >  2:175693/1‑141    AATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAA                                                                                                                                                 >  1:162445/1‑141    AATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAA                                                                                                                                                 >  2:304374/1‑141     ATTTTTAATTTTGTTTAGTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                                                                                <  1:147516/141‑1     ATTTTTAATTTTGTTAATTTGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTGTGTTGAAAC                                                                                                                                                <  2:244718/141‑1     ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAATAAGGAATAGGTTGTTTTTTGAAAC                                                                                                                                                >  2:78031/1‑141     ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                                                                                <  1:180789/141‑1     ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                                                                                >  2:151870/1‑141     ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                                                                                <  2:239213/141‑1     ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                                                                                <  1:141711/141‑1     ATTTTTAATTTTGTTAATTCGAATTTATTTGATAATCCTTTTGACTTTTTTGCGATGTTGATGTATTCACTGGTTTTCTGATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                                                                                <  1:75272/141‑1                 GTTAATTGGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGT‑TCACACTC                                                                                                                                   <  1:101578/141‑1                 GTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGT‑TCACACTC                                                                                                                                   <  1:298005/141‑1                   TAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGT‑TCACACTCGT                                                                                                                                 <  1:126333/141‑1                                                                                                                   AAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGT‑GTGAACGAGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTATACCTAAATAAATTAATGTGAAAACTAATGAATAAATATAACTTTCTAAAAAGT                                >  1:98710/1‑141                                                                                                                        AGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGA‑ACGAGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAACCCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAA                           >  1:14155/1‑141                                                                                                                                        aagaattAACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAA           >  2:146184/8‑141                                                                                                                                          gaaaAAACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTCTCTAACAAGTCAAAAGGATTATCAAATAAAATC         >  2:254630/5‑141                                                                                                                                             GAAACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACGCTCCCAAACCT‑TTTTAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAA      >  1:395267/1‑141                                                                                                                                             GAAACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATAGAA      >  1:381096/1‑141                                                                                                                                             GAAACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACCTTCTAAAAAGTCAAAAGAATTATAAAATAAAATCGAA      >  1:371867/1‑141                                                                                                                                              AAACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑GTGAACGCAAAATAATTAATGTGAAAACCAATGCATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATTGAAT     >  2:242252/1‑141                                                                                                                                              AAACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAAT     >  2:90754/1‑141                                                                                                                                              AAACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAAT     >  1:203633/1‑141                                                                                                                                              AAACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAAT     >  1:22327/1‑141                                                                                                                                              AAACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAAT     >  2:250651/1‑141                                                                                                                                              AAACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAAT     >  2:153967/1‑141                                                                                                                                              AAACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAAT     <  2:10475/141‑1                                                                                                                                              AAACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAAACAATGAATAAATAAAACTTTCTAAAAAGGCAAAAGGATTATCAAATAAAATCGAAT     >  1:65240/1‑141                                                                                                                                              AAACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTAAAAACCAAAGAATAAATAAAACTTTATAAAACGTCAAAAGGATTATCAAATAAAATCGAAT     >  2:59010/1‑141                                                                                                                                               AACTCGT‑TCACACTCGTTTCAAAAAACAAGCTATTCCTTCTTTTTTTTACAACCCC‑CTAAACCTAAAAATATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATT    >  2:180000/1‑141                                                                                                                                               AACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTCTGACCCT‑ATAAACCTAAATAAATTAATGTGAAAACCAAAGAATAAATAAAACTTTCTAAAAACTCAAAAGGATTATCCAATAAAATCCAATT    >  2:232383/1‑141                                                                                                                                               AACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCTG‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATT    >  1:152165/1‑141                                                                                                                                               AACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATT    >  1:180105/1‑141                                                                                                                                               AACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATT    >  1:18907/1‑141                                                                                                                                               AACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATT    >  1:304851/1‑141                                                                                                                                               AACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCAAATT    >  1:306989/1‑141                                                                                                                                               AACTCGT‑TCACACGCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATT    >  2:264958/1‑141                                                                                                                                                ACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAACTAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAACTAAAATCGAATTA   >  1:190364/1‑141                                                                                                                                                ACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATTA   >  1:236587/1‑141                                                                                                                                                ACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATTA   >  2:351494/1‑141                                                                                                                                                ACTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATTA   >  1:323360/1‑141                                                                                                                                                 CTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATTATCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTAAAAAGGATTATCAAATAAAATCGAATTAA  >  2:10857/1‑141                                                                                                                                                 CTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATCAATAAAACTTTCTAAAAAGTCAAAAGTATTATCAAATAAAATCGAATTAA  >  2:119579/1‑141                                                                                                                                                 CTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATTAA  >  2:258061/1‑141                                                                                                                                                 CTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATTAA  >  2:297790/1‑141                                                                                                                                                 CTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATTAA  >  1:182172/1‑141                                                                                                                                                 CTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGAATTATCAAATAAAATAGAATTAA  >  2:50587/1‑141                                                                                                                                                 CTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAAGATTATCAAATAAAATCGAATTAA  >  2:301436/1‑141                                                                                                                                                 CTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGACAAAAGGATTATCAAATAAAATCAAATTAA  >  2:301407/1‑141                                                                                                                                                 CTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTATTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATTAA  >  1:3875/1‑141                                                                                                                                                                                                                                                                                                 TTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2793‑2937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaacTCGT‑TCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCT‑CTAAACCTAAATAAATTAATGTGAAAACCAATGAATAAATAAAACTTTCTAAAAAGTCAAAAGGATTATCAAATAAAATCGAATTAA  <  NC_012417/2949‑2810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.