New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 2937577 (1.060)5 (0.010) 4/250 NT 0.91% intergenic (‑263/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 2949 534 (1.020)intergenic (‑275/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 705 total aligned reads displayed.

ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGT  >  NC_012417/2797‑3077
                                                                                                                                            |                                                                                                                                            
atttttaattttGTTAATTCGAATTTATTTGATAATCCTTTTGACTTTTTTGCGATGTTGATGTATTCACTGGTTTTCTGATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                                                                              <  1:75272‑M1/141‑1 (MQ=255)
 tttttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACg                                                                                                                                             <  1:244607/141‑1 (MQ=255)
   tttaattttGTTAATTCGATTTTATTTTATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                           <  2:187946/141‑1 (MQ=255)
   tttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTATTTTATTTAGGTTTAGATGGTCATTAAAAGAAGAAGGAATAGGTTGTTTTTTGATACGAg                                                                                                                                           >  2:111808/1‑141 (MQ=255)
   tttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                           >  1:301451/1‑141 (MQ=255)
   tttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                           >  1:174232/1‑141 (MQ=255)
    ttaattttGTTAATTCGATTTGATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgt                                                                                                                                          <  2:204092/141‑1 (MQ=255)
        ttttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGa                                                                                                                                      <  2:395333/141‑1 (MQ=255)
          ttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAAc                                                                                                                                    <  1:206138/141‑1 (MQ=255)
            gTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGTAATAGGTTGTTTTTTGAAACGAGTGTGAACGa                                                                                                                                  >  2:373582/1‑141 (MQ=255)
            gTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcacactc                                                                                                                                  <  1:298005‑M1/141‑13 (MQ=255)
             ttAATTTGATTTTATTTGATAATCCTTTTGTCTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAg                                                                                                                                 >  2:301407‑M2/1‑140 (MQ=255)
             ttAATTCGATTTTATTTGATAATCCTTTTTACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGATAATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAg                                                                                                                                 >  2:10857‑M2/1‑140 (MQ=255)
                atgcGATTTTATTTGATAATCCTTTTGACTGTTTGGAAAGTCTTATTTATTCATTGGTTTTTACATGAAGTTATTTAGGTTTAGGGGGTTATGAAAAGAAGAAGGAGTAGGTTGTTTTTTGAAGCGAGTGTGAACGAGttt                                                                                                                              <  2:209477/138‑1 (MQ=255)
                aTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                              >  2:153967‑M2/1‑137 (MQ=255)
                  tCGATTTTATTTGATAATTGGTTTGACTTTTGAGAAAGTTTTATTGATTCATTGGTTTTCACAATAATTTATTTAGGATTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                                                                            <  2:67083/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  1:344675/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  1:199572/141‑1 (MQ=255)
                     aTTTTATTTGATTATTCTTTTGATTTTTTAGAAAGTTTTATTTATTCATTAGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                                                                         <  2:47122/141‑1 (MQ=255)
                     aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTATAGGGGCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGCAACGAGTGTGAACGAGTTtcttct                                                                                                                         <  1:333930/141‑1 (MQ=255)
                     aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                                                                         <  1:180133/141‑1 (MQ=255)
                     aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                                                                         <  1:58620/141‑1 (MQ=255)
                     aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCAAATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                                                                         <  2:270019/141‑1 (MQ=255)
                      ttttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                        <  2:354771/141‑1 (MQ=255)
                      tgttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                        <  1:6693/139‑1 (MQ=255)
                       tttATTTGATAGTCATTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:257355/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:166763/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  1:158959/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  1:213863/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTGACTTTTGAGAAAGTTTTATTTATTTATTGGTTTTCACATTAATTTATTTATGTTTAGAGGGTCATAAAAAGAATAAGGTATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:378894/141‑1 (MQ=39)
                       tttATGTGATAACCCTTGTGACTTTTTGCAAAGTTTTATTTATTCATTGGTGTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  1:11215/141‑1 (MQ=39)
                         tacttaaTAATCCTTTTGAATTTTTAGAAAATTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  2:360207/135‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  2:229741/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:39400/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  2:241605/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTACAGAGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:264782/141‑1 (MQ=255)
                          aTTTGATAATTGTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                    <  2:58362/141‑1 (MQ=255)
                          aTTTGATAATCCTTTTTACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                    <  1:84382/141‑1 (MQ=255)
                          aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                    <  1:326093/141‑1 (MQ=255)
                          aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                    <  1:225931/141‑1 (MQ=255)
                             ttaTAATTCTTTTGAATTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGa                                                                                                                 <  2:13834/139‑1 (MQ=255)
                             tGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGa                                                                                                                 <  1:351983/141‑1 (MQ=255)
                               aTAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATa                                                                                                               >  1:388624/1‑141 (MQ=255)
                                  aTCCTTTTGACTTTTTAGAAAGTTTTATGTATTCATTGGTTTTAACATTAATGTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACta                                                                                                            <  2:130495/141‑1 (MQ=255)
                                     cTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtatat                                                                                                         >  2:77460/1‑141 (MQ=255)
                                       tttGAGTTTTTAGAAATTTTGATTTATTCATGGGTTGTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAg                                                                                                       <  2:52569/141‑1 (MQ=38)
                                       tttGACTTTTTAGAAAGTTTTAATTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGATACGAGTATGAACGAGTTTCTTATTGTCTTGATATtatataa                                                                                                       >  2:274786/1‑140 (MQ=255)
                                         tGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGACCGCGTTTCTTCTTGTCTTGATACTATATAGaa                                                                                                     >  1:32144/1‑141 (MQ=255)
                                         tGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAAGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaa                                                                                                     <  1:288905/141‑1 (MQ=255)
                                          taCTTGTTAGAAAGTTATATTTAGTTGTTGGTATTTACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaaa                                                                                                    <  2:365231/140‑1 (MQ=38)
                                           aCTTTTTAGAAAGTTTTATTTATTCATTGGTTTTTACTTTACTCTACATAGTTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAAt                                                                                                   <  1:373968/141‑1 (MQ=38)
                                              tcttggAAAGGTTTAGTTATTCATTCGTTTTCTAGTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTGTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                <  1:167923/136‑1 (MQ=38)
                                                   gAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAt                                                                                           <  1:257531/141‑1 (MQ=255)
                                                   gAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAt                                                                                           <  1:93006/141‑1 (MQ=255)
                                                     aaGTTTTATTTATTCATTTGTTTACACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTTTTGTCTTGATACTATATAGAAATAACTCGAttt                                                                                         <  2:232558/141‑1 (MQ=255)
                                                             tttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTCATTCAGGTGTTGATACTATATAGAAATAACTCGATTTtatatata                                                                                 >  2:82782/1‑141 (MQ=255)
                                                                  ttatgtgTTTTCAAATTAATTTATTTAGTTTTTGAGGGGCATAAAAAGAAGAAGTAATATGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCt                                                                            <  2:351179/135‑1 (MQ=38)
                                                                   cATTGATTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTg                                                                           <  2:184165/141‑1 (MQ=255)
                                                                    aTTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGt                                                                          <  2:147939/141‑1 (MQ=255)
                                                                    aTTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAG‑AGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTa                                                                         >  1:101295/1‑141 (MQ=255)
                                                                             cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGCGTTTCTTCTCGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGa                                                                 <  1:151870/141‑1 (MQ=255)
                                                                                       tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTTTTTTTTTTTGAACAAGTTTCTTCTTGTCTTGATTTTTTTTTGTTGTAGCACGAATTTATATTTTTTTCTGTAACTGTTattatttttgtt                                                       >  2:384245/1‑135 (MQ=255)
                                                                                            aGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTAATATTACAGTGTTTaa                                                  >  2:142510/1‑141 (MQ=255)
                                                                                             ggTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTaaa                                                 <  1:145854/141‑1 (MQ=255)
                                                                                                  agagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGGAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgtgt                                            >  1:130620/1‑141 (MQ=255)
                                                                                                  agagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgtgt                                            >  2:170524/1‑141 (MQ=255)
                                                                                                  agagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgtgt                                            >  1:27723/1‑141 (MQ=255)
                                                                                                   gagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtt                                           >  1:106143/1‑141 (MQ=255)
                                                                                                   gagGGTCAGAAAAAGAAGTAGGAATAGGTTGTTTTTTCAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtt                                           <  1:34850/141‑1 (MQ=255)
                                                                                                    agGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGttt                                          <  1:367749/141‑1 (MQ=255)
                                                                                                     gggTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTTTTTAAACGTGtctt                                         >  2:21805/1‑141 (MQ=255)
                                                                                                       gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                       <  2:283775/141‑1 (MQ=255)
                                                                                                        tCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtgt                                      >  1:123995/1‑141 (MQ=255)
                                                                                                            aaaaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTTTTTAAACGTGTTTTTGTTCGt                                  >  2:292916/1‑141 (MQ=255)
                                                                                                             aaaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTg                                 >  1:30937/1‑141 (MQ=255)
                                                                                                                  aagaagGAATTGGTTTTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTTTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                            <  2:9064/141‑1 (MQ=255)
                                                                                                                  aagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                            <  2:342892/141‑1 (MQ=255)
                                                                                                                   agaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGa                           <  2:26798/141‑1 (MQ=255)
                                                                                                                    gaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTATTTAAACGTGTTTTTGTGCGTGAAAGGaa                          >  2:333464/1‑141 (MQ=255)
                                                                                                                    aaagGAATAGCTTGTTTTTTGAACCGAGTGTCAACGAGTTTCTTCTTGTCTTGATACTATATAGCAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTCCAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGaa                          <  1:78639/140‑1 (MQ=39)
                                                                                                                     aagTAATTGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGaaa                         <  2:245405/141‑1 (MQ=255)
                                                                                                                     aagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGaaa                         >  1:18299/1‑141 (MQ=255)
                                                                                                                          aTAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTg                    <  1:360614/141‑1 (MQ=255)
                                                                                                                            aGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGAc                  <  1:235745/141‑1 (MQ=255)
                                                                                                                              gttgttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGACATCAGAACGCCAGAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACaa                >  1:270337/1‑141 (MQ=37)
                                                                                                                                 gttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaa             <  2:326169/141‑1 (MQ=255)
                                                                                                                                 gttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaa             >  1:38214/1‑141 (MQ=255)
                                                                                                                                  ttttttGAAAAGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaa            <  2:313235/141‑1 (MQ=255)
                                                                                                                                   tttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaa           <  1:238536/141‑1 (MQ=255)
                                                                                                                                   tttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaa           <  2:19459/141‑1 (MQ=255)
                                                                                                                                     tttGAAAGGAGTGTGAACGAGTTTGTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaata         <  2:390048/141‑3 (MQ=255)
                                                                                                                                     gttGAAACGAGGGGGAACGAGTTTCTTCTGAGCTTGATAGTATAGAGAAATAACTGGATTTTATATATATAGCTGTAACGGTTGGTATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaaaa         <  2:118487/140‑1 (MQ=255)
                                                                                                                                      ttGAAACGAGTGTAAACGAGTTTATTTTTGGTTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAc        <  2:100483/141‑1 (MQ=255)
                                                                                                                                       tGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGTGTGAAAGGAAAATTTGACAATAAAAAAcc       >  1:48686/1‑141 (MQ=255)
                                                                                                                                       tGAAAAGAGTGTGAATGAGTTTCTTCTTATCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTATTTTTGTGCTTGAAAGGAAAATTTGACAATAAAAAAcc       <  2:123081/141‑1 (MQ=255)
                                                                                                                                        gAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTAGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCTTGAAAGGAAATTTTGACAATAAAAAAccc      >  2:262533/1‑141 (MQ=255)
                                                                                                                                        aaaaCGAGTGTGAACGAGTTTCTTTTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAccc      <  2:173932/140‑1 (MQ=255)
                                                                                                                                         aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaat     >  1:22327‑M1/1‑4 (MQ=255)
                                                                                                                                         aaaCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTAACAATAAAAAAcccc     >  1:193033/1‑141 (MQ=255)
                                                                                                                                          aaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcaaatt    >  1:306989‑M1/1‑3 (MQ=255)
                                                                                                                                            |                                                                                                                                            
ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGT  >  NC_012417/2797‑3077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.