New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 2937577 (1.060)5 (0.010) 4/250 NT 0.91% intergenic (‑263/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 2949 534 (1.020)intergenic (‑275/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 636 total aligned reads displayed.

GTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAG  >  NC_012417/2809‑3089
                                                                                                                                            |                                                                                                                                            
 ttAATTCGATTTTATTTGATAATCCTTTTTACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGATAATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAg                                                                                                                                             >  2:10857‑M2/1‑140 (MQ=255)
  tAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgt                                                                                                                                            >  2:351494‑M2/1‑139 (MQ=255)
  tAATTCGATTTTAGTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTAGTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgt                                                                                                                                            >  1:190364‑M2/1‑139 (MQ=255)
    aTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                                          >  2:90754‑M2/1‑137 (MQ=255)
    aTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                                          >  1:22327‑M2/1‑137 (MQ=255)
    aTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                                          >  1:203633‑M2/1‑137 (MQ=255)
    aTTCGATTTTATTTGATAATCCTTTTGACGTTTTATAAAGTTTTATTTATTCTTTGGTTTTTACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                                          >  2:59010‑M2/1‑137 (MQ=255)
     ttCTATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgtttc                                                                                                                                         >  1:381096‑M2/1‑136 (MQ=255)
     ttCGATTTTATTTTATAATTCTTTTGACTTTTTAGAAGGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgtttc                                                                                                                                         >  1:371867‑M2/1‑136 (MQ=255)
      tCGGTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                                                                                        <  2:129652/141‑1 (MQ=255)
      tCGATTTTATTTGATAATCCTTTTGACTTTTTAGTAAATTTTTTTTACTGATGATTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                                                                                        <  2:384355/141‑1 (MQ=255)
       cGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttctt                                                                                                                                       <  1:332902/141‑1 (MQ=255)
         aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGGGTGAACGAGTTtcttct                                                                                                                                     >  1:262251/1‑141 (MQ=255)
           tttattttatAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                                   <  2:376956/141‑1 (MQ=255)
           tttATTTGATAGTCATTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                                   <  2:257355/141‑1 (MQ=255)
           tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                                   <  1:118525/141‑1 (MQ=255)
           tttATTTGATAATCCTTTTGACTTTTTAAGCAGTCTTATGTATTACTTGCTTATCACATTAATTTATTTAGGTTCAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                                   <  1:90627/141‑1 (MQ=38)
            ttATTTGATAATCCTTTTGACTTTTTATAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                                                                                  <  2:173263/141‑1 (MQ=255)
             tATTTTATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  2:11697/141‑1 (MQ=255)
             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  2:169735/141‑1 (MQ=255)
             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  1:97456/141‑1 (MQ=255)
             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  1:75671/141‑1 (MQ=255)
             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  1:174711/141‑1 (MQ=255)
             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  1:304374/141‑1 (MQ=255)
             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTacttgtc                                                                                                                                 <  1:78878/141‑1 (MQ=255)
             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATGTATTTAGGTTTAGAGGGTAATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  2:202259/141‑1 (MQ=255)
              aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                                <  1:225931/141‑1 (MQ=255)
              aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAACAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                                >  2:270758/1‑141 (MQ=255)
              aTTTGATAATCCTTTTGAATTTTTAGAAAGTTTTATTTATTCATTGGTTTTTACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                                <  2:313591/141‑1 (MQ=255)
               tttGATAATCTTTTTGACTTTTTAGAAAGTTTGATTTATTCATATGTTTTCACATTAATTTATTTAGGTAGAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtctt                                                                                                                               <  1:34134/141‑1 (MQ=38)
                 tGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGa                                                                                                                             <  1:364484/141‑1 (MQ=255)
                  gATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGAt                                                                                                                            >  2:188431/1‑141 (MQ=255)
                     aaTACTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACt                                                                                                                         <  2:294922/141‑1 (MQ=255)
                        ccTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtata                                                                                                                      <  2:380107/141‑1 (MQ=255)
                           tttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTAATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAg                                                                                                                   <  1:35607/141‑1 (MQ=255)
                            ttGAATTTTTAGAAAGTTTTATTTATTGATTGGTTTTGAGATTAATTTATTTAGGTTTAGAGGGTCATAAAACGGAGACGTTATAGATTATCTTTAAGGACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGa                                                                                                                  <  2:85380/141‑1 (MQ=255)
                             tGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTGTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaa                                                                                                                 <  1:127372/141‑1 (MQ=255)
                              gaattttgAGAAAGTTTTATGTAGTCATTGATTTTAACAATAATTAATTTAGGTTTAGAGAGTCCTAAAAAGAAGAAGGAATAGATTGTTTTTTGAAACGATTGAGAAAGAGAATCTTCTTGTCTTGATACTATATAGaaa                                                                                                                <  2:284991/138‑1 (MQ=255)
                                cTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATa                                                                                                              <  1:146772/141‑1 (MQ=255)
                                 tttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATaa                                                                                                             <  2:111322/141‑1 (MQ=255)
                                  ttttAGAAAGTTTTATTTATTCATTGGTTTTCATATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                            <  2:120318/141‑1 (MQ=255)
                                  tttgAGAAAGTTTTATTTATTCATTGGTTGTCACATTAATTTATTTAGGTTTAGATGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTAGTGTTAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                            <  2:396051/141‑1 (MQ=39)
                                   tttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                                                                                           >  1:347814/1‑141 (MQ=255)
                                   tttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                                                                                           <  1:308792/141‑1 (MQ=255)
                                    ttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTc                                                                                                          >  1:396434/1‑141 (MQ=255)
                                    ttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTc                                                                                                          <  1:84118/141‑1 (MQ=255)
                                    ttAGAAAGTTTTATTTATACATTCGTTTTCACATTAATTTATTTAGTTTTAGAGGGTCATAAAAAGAAGAAGGAATACGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTc                                                                                                          <  2:355400/141‑1 (MQ=255)
                                     ttgAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCg                                                                                                         <  1:160077/139‑1 (MQ=255)
                                       gAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAt                                                                                                       <  1:257531/141‑1 (MQ=255)
                                        aaaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtt                                                                                                      <  1:32391/141‑1 (MQ=255)
                                          aattttATTTATTCATTTGTTTTCACATTAATTTATTTAGGTTTAGAGAGTCATAAAAAGAAGAAGGAATAGATTATTTTTTGAAACTACTGTAAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtttt                                                                                                    <  1:298268/139‑1 (MQ=255)
                                                     ttCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGc                                                                                         <  1:316348/141‑1 (MQ=255)
                                                      tCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCt                                                                                        <  2:78114/141‑1 (MQ=255)
                                                        gttagTTTTTTCATTAATTTATTTATGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGt                                                                                      <  2:360226/137‑1 (MQ=255)
                                                        aTTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGt                                                                                      <  2:147939/141‑1 (MQ=255)
                                                        aTTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAG‑AGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTa                                                                                     >  1:101295/1‑141 (MQ=255)
                                                        aTTGGTGTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGACACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATTGTTAGATAACTCTATTTTATATATATAGCTGt                                                                                      <  2:301749/141‑1 (MQ=38)
                                                           ggTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATCGAGCTGTAAc                                                                                   >  1:10598/1‑141 (MQ=255)
                                                              tttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGGAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGt                                                                                >  2:243290/1‑141 (MQ=255)
                                                                 cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGa                                                                             >  2:367749/1‑141 (MQ=255)
                                                                 cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGa                                                                             >  1:243247/1‑141 (MQ=255)
                                                                   attgtattgatttAGGTTTAGAGGGTAATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAGACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGata                                                                           <  2:223180/136‑1 (MQ=255)
                                                                         tttatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAg                                                                     <  2:53474/141‑1 (MQ=255)
                                                                           tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtg                                                                   >  1:198824/1‑141 (MQ=255)
                                                                             tttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGtt                                                                 >  1:29122/1‑141 (MQ=255)
                                                                               taGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTa                                                               <  1:15634/141‑1 (MQ=255)
                                                                                     ttaagGATCATAAAAAGAAGAAATAATATGTTGTTTTTTGAATCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTATCTGTTGATATTACAGTGTTTAAACgtg                                                         <  2:157115/138‑1 (MQ=38)
                                                                                     tAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgtg                                                         <  1:217105/141‑1 (MQ=255)
                                                                                      agagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACCGTTGATATTACAGTGTTTAAACgggt                                                        >  1:28063/1‑141 (MQ=255)
                                                                                       gagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTCAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATCTATAGAAGTAACTTTTTTTAGTACAGTGTTTAAACGTGtt                                                       <  1:274232/141‑1 (MQ=38)
                                                                                           gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                                   <  2:182666/141‑1 (MQ=255)
                                                                                              aTAAGAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGc                                                <  2:166850/141‑1 (MQ=255)
                                                                                               tAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAAAAATATTCTTCTTGTATTGATACGACATAGAAATAACTCGATTTTATATATATAGCTATAACTTTTGATATTACAATTTTTAAATTTATTTTTGTTCg                                               >  2:47872/1‑141 (MQ=255)
                                                                                                aaaaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGCGTTTATACGTGTTTTTGTGCGt                                              >  1:351287/1‑141 (MQ=255)
                                                                                                      aagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATAGAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                                        <  1:61261/141‑1 (MQ=255)
                                                                                                      aagaagGAATAGGTTGTTTTTAAAAAAGCGTGGGAACGATTTTCTTCTTGTGTTGATTCTATAGAGAAAGAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                                        <  2:278949/141‑1 (MQ=255)
                                                                                                       agaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGa                                       <  2:26798/141‑1 (MQ=255)
                                                                                                       agaagGAATAGGTTGTTTTTTCAACCGAGTGTGAACGAGTCTCTTATTGTCTCGCTCCTATCCAGCACTACCCCCATTTGATATATATAGCTGTAACTGTTCATATCATCTTGTTGGATCGTGGTTTTGTGCGTGAAAGGa                                       <  2:7166/141‑1 (MQ=255)
                                                                                                        gaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTATTTAAACGTGTTTTTGTGCGTGAAAGGaa                                      >  2:333464/1‑141 (MQ=255)
                                                                                                            gAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACTTGTTTTTGTGCGTGAAAGGAAAAtt                                  >  2:237935/1‑141 (MQ=255)
                                                                                                                aGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGAc                              <  1:235745/141‑1 (MQ=255)
                                                                                                                 ggTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACa                             >  1:67541/1‑141 (MQ=255)
                                                                                                                     gttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaa                         <  2:326169/141‑1 (MQ=255)
                                                                                                                     gttTTTTGAAACGAGTGTGAAAGAGTTTCTTCTTGTCTTTATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaa                         <  1:53821/141‑1 (MQ=255)
                                                                                                                       tttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaa                       <  1:238536/141‑1 (MQ=255)
                                                                                                                       tttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaa                       <  2:19459/141‑1 (MQ=255)
                                                                                                                       tttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaa                       <  2:230100/141‑1 (MQ=255)
                                                                                                                        ttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaaa                      <  1:111817/141‑1 (MQ=255)
                                                                                                                         tttGAAAGGAGTGTGAACGAGTTTGTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaata                     <  2:390048/141‑3 (MQ=255)
                                                                                                                         tttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGCAAGGAAAATTTGACAATaaaaaa                     >  2:139076/1‑141 (MQ=255)
                                                                                                                           tGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAcc                   >  2:212507/1‑141 (MQ=255)
                                                                                                                            gAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTAGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCTTGAAAGGAAATTTTGACAATAAAAAAccc                  >  2:262533/1‑141 (MQ=255)
                                                                                                                             aaaCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAcccc                 <  1:180431/141‑1 (MQ=255)
                                                                                                                             aaaCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAcccc                 <  1:389084/141‑1 (MQ=255)
                                                                                                                               aCGAGTGTGAACGAGTGTCTTCTTGTCTTGATACTATATAGAAATTACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAg               <  2:134539/141‑1 (MQ=255)
                                                                                                                                agAGTGTAAAAGAGTTTCTTCTTATCTAGATATAATATAGAAATAACAAGATTTTATATATATAGCTGTAACTGTTGGGATTACAGTATTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGt              <  2:142984/140‑1 (MQ=255)
                                                                                                                                   gtgtGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTtat           <  1:267580/141‑1 (MQ=255)
                                                                                                                                       gAACGATTTTCTTCTTGTCTTTATACTGTAGATCAATATCTCGATTTTATATATATATCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTAtatta       <  1:168046/141‑1 (MQ=255)
                                                                                                                                        aaCGAGTTTCTTCTTTTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTAtattat      <  1:385171/141‑1 (MQ=255)
                                                                                                                                        aaCGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGCTATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACACCAGTTAtattat      >  2:344315/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
GTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAG  >  NC_012417/2809‑3089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.