New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 2664 =702 (1.070)4 (0.010) 4/270 50.1 0.58% coding (11/582 nt) USA300HOU_RS14900 hypothetical protein
?NC_012417 2715 = 686 (1.070)intergenic (‑41/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 722 total aligned reads displayed.

TTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTT  >  NC_012417/2576‑2854
                                                                                                                                           |                                                                                                                                           
tttGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGACCCCTTGTTTTGTTATTTAAATGAATTCaata                                                                                                                                             >  1:65396/1‑140 (MQ=255)
 ttGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCGCTTGTTTTGTTATTTAAATGAATTCaatat                                                                                                                                            <  2:262601/140‑1 (MQ=255)
   gAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCATTGTTTTGTTATTTAAATGAATTCaatataa                                                                                                                                          >  2:16918/1‑140 (MQ=255)
      aTTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCaatataatat                                                                                                                                       >  2:147001/1‑140 (MQ=255)
         aaaaTCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGCCTTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATTAATTCAATATAATATTaa                                                                                                                                    >  2:130897/1‑140 (MQ=255)
         aaaaTCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTAATAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTGATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTTAATTTGATATTaa                                                                                                                                    >  1:45209/1‑140 (MQ=255)
          aaaTCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAAc                                                                                                                                   <  2:220574/140‑1 (MQ=255)
           aaTCCAAGACCATTGCAAGTATGTGGAAAAGATTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGACCCCTTGTTTTGTTATTTAAGTCAATTCAAGATAATATTAACa                                                                                                                                  >  2:19507/1‑140 (MQ=255)
              ccAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACatat                                                                                                                               <  1:125587/140‑1 (MQ=255)
               cAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACAtata                                                                                                                              >  1:57220/1‑140 (MQ=255)
                 aGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATaaa                                                                                                                            <  2:200615/140‑1 (MQ=255)
                 aGACCAATGAAAGGATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATaaa                                                                                                                            <  1:60021/140‑1 (MQ=255)
                  gACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATaaaa                                                                                                                           >  2:7443/1‑140 (MQ=255)
                     cATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCACTATAATATTAACATATAAAAACa                                                                                                                        >  1:220865/1‑140 (MQ=255)
                         gAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAgg                                                                                                                    >  1:909/1‑140 (MQ=255)
                            aGTATGGTTAAAATACTTAAAGATACTATTAAATTCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGt                                                                                                                 <  2:227177/140‑1 (MQ=255)
                             gTATGTTTAAAATAATTATAGATACTACTAAAATCTTTCTTAGTTATATACTTTTTTGAATTGCATTCATTGTAAAAGCCTCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGtt                                                                                                                <  2:178064/140‑1 (MQ=255)
                              tATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTTAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTGAATATAATATTCACATATAAAAACAAAGGAGtat                                                                                                               >  2:23671/1‑138 (MQ=255)
                              tATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAAAAAAGGAGttt                                                                                                               >  1:10745/1‑140 (MQ=255)
                                  gTTACAATACTTAAAGCTACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAata                                                                                                           <  1:100111/140‑1 (MQ=255)
                                    tAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATg                                                                                                         >  1:70832/1‑140 (MQ=255)
                                         tACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATaa                                                                                                    <  1:260177/140‑1 (MQ=255)
                                         tACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATACTAACATATAAAAACAAAGGAGTTTAATATGAATaa                                                                                                    >  1:8292/1‑140 (MQ=255)
                                           cTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGt                                                                                                  >  1:224058/1‑140 (MQ=255)
                                              aaaGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGtttt                                                                                               >  1:192012/1‑140 (MQ=255)
                                              aaaGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGtttt                                                                                               <  1:166496/140‑1 (MQ=255)
                                              aaaGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGtttt                                                                                               <  2:243944/140‑1 (MQ=255)
                                                aGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTAATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTGCATATATTAGTAACATATAAAAACAAAGGAGTTTAATATGAATAAGtttttt                                                                                             >  2:56587/1‑140 (MQ=255)
                                                 gATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGttttttt                                                                                            >  2:37520/1‑140 (MQ=255)
                                                  aTACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTa                                                                                           >  1:78237/1‑140 (MQ=255)
                                                     ctactaAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACtt                                                                                        >  2:86622/1‑140 (MQ=255)
                                                     ctactaAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCACCATTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACtt                                                                                        >  2:516/1‑140 (MQ=255)
                                                      tactaAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACttt                                                                                       <  2:205648/140‑1 (MQ=255)
                                                       actaAACTCTTTCTTAGTGATATACTGTTTTGAATTGTATTCATTGTAAATACCCTCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACcttt                                                                                      <  2:25067/140‑1 (MQ=255)
                                                             ttcttttttATTGATATACTGTTTTGAATTGTATTCATTGTAAATGCGTCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACTTATAAATTCAAAGTATTTTAATATTAATAAGTTTTTTTACTTTTGGatta                                                                                <  2:123444/139‑1 (MQ=255)
                                                             aTCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGatta                                                                                <  1:144048/140‑1 (MQ=255)
                                                             aTCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAAAATGTTTTTTTACTTTTTGatta                                                                                >  1:236431/1‑140 (MQ=255)
                                                              tctttcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGtttat                                                                               >  2:134428/1‑140 (MQ=255)
                                                                tttcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGAttattt                                                                             >  1:253994/1‑140 (MQ=255)
                                                                  tcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAACTGAATTCAATATACTATTAACATATAAAAACAAAAGAGTTTAATATGAATAAGTTTTTTTACTTTTTGAttatttta                                                                           >  1:66305/1‑140 (MQ=255)
                                                                  tcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATCTTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGAttatttta                                                                           >  2:47177/1‑140 (MQ=255)
                                                                  tcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTATTTTTTTTttttttta                                                                           >  2:83156/1‑140 (MQ=255)
                                                                  tcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGAttatttta                                                                           >  2:142260/1‑140 (MQ=255)
                                                                  tcttAGTGATATACTGGTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCACTATACTATTATCATCTACCACCCCAGGAGTTTAATATGAATAAGTTATTTTACTTATTGAatatttaa                                                                           >  1:201043/1‑138 (MQ=255)
                                                                   cttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGAttattttat                                                                          >  2:151849/1‑140 (MQ=255)
                                                                     tAGTGATATACTGTTTTGAATTGTATTTATTGTAAATGTCTCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTttatta                                                                        <  1:17561/140‑1 (MQ=255)
                                                                          gtttaCTGTTTTTAATTCGATTCATTGTAAATGCCCCGTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGt                                                                   <  2:117679/137‑1 (MQ=255)
                                                                          atatACTGTTTTGAATTTCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTGTTTTATTATCTGt                                                                   >  2:252678/1‑140 (MQ=255)
                                                                           tataATGTTTTGAATTTCAGTCATTGTAAATGCCATCTTGTTTTGTTAATTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTa                                                                  <  2:174834/140‑1 (MQ=255)
                                                                             taCTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatt                                                                >  1:226708/1‑140 (MQ=255)
                                                                              attGTTTTGAATTGCATTCATTGTAAATGACCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTattt                                                               <  2:78302/138‑1 (MQ=255)
                                                                                tGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGCTTATTTTATTatctttatcttt                                                             >  2:64792/1‑140 (MQ=255)
                                                                                tGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTattttt                                                             >  1:42594/1‑140 (MQ=255)
                                                                                 gTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTattttta                                                            >  2:138189/1‑140 (MQ=255)
                                                                                 gTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATAATAACACCTTATAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTattttta                                                            >  1:264853/1‑140 (MQ=255)
                                                                                   tttGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaat                                                          <  1:185972/140‑1 (MQ=255)
                                                                                   tttGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTAATTTTTGATTATTTTATTATCTGTatttttaat                                                          >  2:42302/1‑140 (MQ=255)
                                                                                    ttGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaatt                                                         >  1:84616/1‑140 (MQ=255)
                                                                                      tgagtGCATTCATTGTCAATGACGACTTGTTTTGTTATTTAAATGAATTCAATATAATATTATCATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaatttt                                                       <  2:27064/136‑1 (MQ=255)
                                                                                      gAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAATATCTGGAAATGCTAATATGCTGTCGGTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaatttt                                                       <  1:195889/140‑1 (MQ=255)
                                                                                      gAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaatttt                                                       <  2:112997/140‑1 (MQ=255)
                                                                                           gCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTtttaatttttaatt                                                  >  1:74678/1‑140 (MQ=255)
                                                                                            cattcattGTAAATGTCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTttaatttttaattt                                                 <  1:240535/140‑1 (MQ=255)
                                                                                            cattcattGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTttaatttttaattt                                                 >  1:30838/1‑140 (MQ=255)
                                                                                               tcattGTCAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGt                                              <  1:246870/140‑1 (MQ=255)
                                                                                                cattTTAAATGCCCCCTTGTTTTTTCCTGATAACTAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGtt                                             <  1:112250/140‑1 (MQ=255)
                                                                                                cattGTAAATGCCTCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGtt                                             <  2:89752/140‑1 (MQ=255)
                                                                                                  ttGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTaa                                           >  1:163330/1‑140 (MQ=255)
                                                                                                     tAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTc                                        <  2:106950/140‑1 (MQ=255)
                                                                                                      aaaTGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTCCTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAAttgg                                       >  1:27845/1‑138 (MQ=255)
                                                                                                      aaaTGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTTTATTTTTTATTTTTAATTTTTTTACTTCg                                       >  2:71114/1‑140 (MQ=255)
                                                                                                      aaaTGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTATTTTTGTTTATTCg                                       >  1:215533/1‑140 (MQ=255)
                                                                                                       aaTGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGa                                      >  1:230922/1‑140 (MQ=255)
                                                                                                        aTGCCCCCTTGTTTTGTTATTTAAATGGATACATTATAATATTACAATATAGATGCAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGAt                                     <  1:36917/140‑1 (MQ=255)
                                                                                                           cccccTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGTtttt                                  >  2:92995/1‑140 (MQ=255)
                                                                                                             cctttgttttgtaATTTAAATGAATTTAATATAATTTTAACATATAAATACAAAGGAGTTTAATATGTATAAGTTTTTTTAATTTTTGATTATTTTATTATCTGTATTTTTACTATATACTTGTATTCATTAGATTTTAt                                <  2:59155/137‑1 (MQ=255)
                                                                                                             cccTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTAt                                <  1:52697/140‑1 (MQ=255)
                                                                                                              ccTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACTTATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTAtt                               <  1:181509/140‑1 (MQ=255)
                                                                                                              ccTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTGTCTGTATTTTTAATTTTTAGTTTTGTTAATTCGATTTTAtt                               >  1:139333/1‑140 (MQ=255)
                                                                                                              ccTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTAtt                               >  1:114805/1‑140 (MQ=255)
                                                                                                                ttgttttattATTTAAATGAATTTAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTg                             <  2:158272/140‑1 (MQ=255)
                                                                                                                 tgttttgttATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGa                            >  1:13452/1‑140 (MQ=255)
                                                                                                                 gtttttgttATTTAAATGAATTAAATATAATATTATCATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTTCTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGa                            <  2:241281/138‑1 (MQ=255)
                                                                                                                  gttttgttATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGAt                           <  1:152747/140‑1 (MQ=255)
                                                                                                                  gttttgttATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGAt                           <  1:99958/140‑1 (MQ=255)
                                                                                                                  gttttgttATTTAAATGAATTAAATATAATATTCACATAAAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGAt                           <  1:206588/140‑1 (MQ=255)
                                                                                                                  cttttgttATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGAt                           <  2:212516/139‑1 (MQ=255)
                                                                                                                   ttttgttATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATa                          >  1:157335/1‑140 (MQ=255)
                                                                                                                       gttATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATcc                      >  1:119210/1‑140 (MQ=255)
                                                                                                                        ttATTTAAATTAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCt                     <  1:105043/140‑1 (MQ=255)
                                                                                                                        ttATTTAAATGAATTAAATATAATATTAATATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCt                     <  2:19144/140‑1 (MQ=255)
                                                                                                                           tttAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCtttt                  >  2:3177/1‑140 (MQ=255)
                                                                                                                            ttAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTg                 >  1:202703/1‑140 (MQ=255)
                                                                                                                             tAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTATTTTTTGTTTATTTTATTATCTTTATTTTTAATTTTTAATTTTATTATTTTTTTTTTATTTTTTAATttttttta                >  2:165051/1‑138 (MQ=255)
                                                                                                                                  gAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACtttt           <  1:211578/140‑1 (MQ=255)
                                                                                                                                    aTTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATTTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATATGATTTTTTTTTTGATTTTTTa         >  2:1194/1‑140 (MQ=255)
                                                                                                                                    aTTCAATACAATATTGATATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTa         >  2:97617/1‑140 (MQ=255)
                                                                                                                                      tCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGa       >  1:13713/1‑140 (MQ=255)
                                                                                                                                         atataatatTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAg    <  2:110194/140‑1 (MQ=255)
                                                                                                                                           ataatatTAATATATAAAAATAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGtt  <  2:183889/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                           
TTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTT  >  NC_012417/2576‑2854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.