BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 1057	840 (0.770)	6 (0.010)	6/222	NT	0.75%	coding (138/192 nt)	USA300HOU_RS15665	hypothetical protein
*	?	NC_012417	= 1071	865 (0.930)	6 (0.010)	6/222	NT	0.75%	coding (124/192 nt)	USA300HOU_RS15665	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 357 total aligned reads displayed.

AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/901‑1057

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcttatttttgtgacaCTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTT  <  NC_012417/1071‑933

AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACT                                                                                                                                                               <  1:684571/140‑1

AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGCCTTACCTGTTGATTTTTTATAAAAAAGTACT                                                                                                                                                               >  1:317594/1‑140

 GTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTc                                                                                                                                                              >  2:674239/1‑139

 GTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTG                                                                                                                                                              >  1:112011/1‑140

 GTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTG                                                                                                                                                              <  2:154902/140‑1

  tcATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGT                                                                                                                                                             <  2:291909/138‑1

   GATGAAGATAAAACAACAGACGAAGTAGAAAAAGCACATTCAATTATCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTC                                                                                                                                                            <  2:131608/140‑1

   GATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTC                                                                                                                                                            <  1:236756/140‑1

   GATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACACTAGTGTTGAAAAATATCTTTTTTGTTGATTTTTTATAAAAAAGTACTtgc                                                                                                                                                            >  2:266363/1‑137

   GATGAAGATAAAACAACAGAAGTAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTC                                                                                                                                                            >  2:237452/1‑140

   GATGAAGATAAAACAAAAGACGAAAAAAAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATAAAAAAAAAAAAAGTACTGTC                                                                                                                                                            <  2:146376/140‑1

    ATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                                                                                                                                           <  2:619373/140‑1

    ATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                                                                                                                                           <  2:752227/140‑1

    ATGAAGAAAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                                                                                                                                           <  1:473641/140‑1

      GAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAATTACTGTCTTA                                                                                                                                                         >  2:653739/1‑140

      GAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTA                                                                                                                                                         >  1:712135/1‑140

      GAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTA                                                                                                                                                         <  1:365587/140‑1

      GAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAAGTATTATTTAAGACATTAGTGTTGCCTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTA                                                                                                                                                         >  1:390388/1‑140

       AAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTAT                                                                                                                                                        >  1:30455/1‑140

       AAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTAT                                                                                                                                                        <  2:462553/140‑1

       AAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTAT                                                                                                                                                        >  1:583191/1‑140

        AGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATT                                                                                                                                                       >  1:359773/1‑140

        AGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATT                                                                                                                                                       >  2:199265/1‑140

         GATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTT                                                                                                                                                      >  1:463956/1‑140

         GATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAATACTGTATTATTT                                                                                                                                                      >  2:232758/1‑140

          ATAAAACAACAGACAAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTT                                                                                                                                                     >  2:755025/1‑140

             AAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGT                                                                                                                                                  >  1:676027/1‑140

             AAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGT                                                                                                                                                  <  1:59473/140‑1

              cACAACTGACGCAGCAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTG                                                                                                                                                 <  2:601135/139‑1

              aagAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTG                                                                                                                                                 <  2:551405/137‑1

              AACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTG                                                                                                                                                 <  1:18840/140‑1

              AACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTG                                                                                                                                                 <  2:115604/140‑1

              AACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTG                                                                                                                                                 <  1:665626/140‑1

              AACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTG                                                                                                                                                 <  1:232119/140‑1

              AACAACAGACGAAGAAGAAAAAGCACAGTAAATTAGCTCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTG                                                                                                                                                 <  2:534928/140‑1

               acgACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAATACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                                                                                                               >  2:633124/4‑140

               aaAACGGACGAAGAAGAAAAAGTACAGTCAAATACCGAAATTTTGAATTTCGAAAAGCGAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATGTTTTATAAAAAAGTACTGGCTTATTGTTGTGA                                                                                                                                                <  2:476252/138‑1

               ACAACAGACGAAGAAGAAAAAGCACATTCAATTAGCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGA                                                                                                                                                <  2:530130/140‑1

               ACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAGGTACTGTCTTATTTTTGTGc                                                                                                                                                >  2:173570/1‑139

               ACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGA                                                                                                                                                <  1:438551/140‑1

               ACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGA                                                                                                                                                <  2:515111/140‑1

               ACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGA                                                                                                                                                >  1:693164/1‑140

               ACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGA                                                                                                                                                <  2:313583/140‑1

               ACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGA                                                                                                                                                <  2:505261/140‑1

               ACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGA                                                                                                                                                >  2:693929/1‑140

               ACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGA                                                                                                                                                >  2:735835/1‑140

                CAACAGACGAGGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                                                                                                               <  2:565762/140‑1

                CAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                                                                                                               <  1:284809/140‑1

                CAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                                                                                                               <  2:223055/140‑1

                CAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                                                                                                               <  1:26319/140‑1

                CAACAGACGAAGAAGAAAAAGCACAGTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                                                                                                               <  1:132820/140‑1

                 AACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACA                                                                                                                                              <  1:560885/140‑1

                                        ATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATGTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAA                                                                                                                       <  2:614599/140‑1

                                                                                                                                           TGTCTTTTTTTTGTGACACTAAATACAGCATTTGACACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGG                   <  1:342336/140‑1

                                                                                                                                           TGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGc                   >  2:678289/1‑139

                                                                                                                                           TGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGG                   <  2:392287/140‑1

                                                                                                                                           TGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGG                   <  1:734239/140‑1

                                                                                                                                            GTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGT                  >  2:712563/1‑140

                                                                                                                                            GTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGT                  >  1:747924/1‑140

                                                                                                                                            GTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGT                  >  1:609130/1‑140

                                                                                                                                             TCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATACGACAGTACTTTTTTAT‑AAAAAATCCACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCACATTGCGGTA                 >  1:168519/1‑140

                                                                                                                                             TCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTTCGGTA                 >  2:432306/1‑140

                                                                                                                                             TCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTA                 >  2:185710/1‑140

                                                                                                                                             TCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTA                 >  2:423617/1‑140

                                                                                                                                             TCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGGCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTA                 >  2:413707/1‑140

                                                                                                                                              CTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAA                >  2:708826/1‑140

                                                                                                                                              CTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAA                >  1:505420/1‑140

                                                                                                                                              CTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTATTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAA                >  2:596960/1‑140

                                                                                                                                               TTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGCCATTCCAAATTTCGGTAAT               >  2:362984/1‑140

                                                                                                                                               TTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAAT               >  2:406850/1‑140

                                                                                                                                                TATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATT              >  1:407371/1‑140

                                                                                                                                                 ATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTG             <  1:615665/140‑1

                                                                                                                                                 ATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTG             >  1:647706/1‑140

                                                                                                                                                     TTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAAATCAAAAAAAAAGACATTAGTAACCACTAATGTTTTAAATATTAATTTTGCTTTTCGAAATCCCAAATTGCGGTATTTGAAT          >  1:144266/1‑140

                                                                                                                                                     TTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATG         <  2:85026/140‑1

                                                                                                                                                     TTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATG         <  2:243693/140‑1

                                                                                                                                                     TTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATG         <  1:536093/140‑1

                                                                                                                                                     TTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATG         <  1:419477/140‑1

                                                                                                                                                      TGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAACTCAACAAAAAAGACATTAGTCAACACTAATGTCTTCAATAATAATTTTGCTTTTCGAAATTCAAAATAGCGTTAATTTAATtt        >  1:300404/1‑138

                                                                                                                                                      TGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGT        >  1:6330/1‑140

                                                                                                                                                      TGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGT        >  1:484330/1‑140

                                                                                                                                                      TGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGT        >  1:106804/1‑140

                                                                                                                                                      TGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCAAAATTGCGGTAATTGAATGT        >  2:658439/1‑140

                                                                                                                                                      TGTGACACTACATACACCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATATTGCTCTTCGCAATTCCATATTGCGGTAAATGAATGT        >  2:324115/1‑140

                                                                                                                                                       GTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑ACAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTG       >  2:44342/1‑140

                                                                                                                                                       GTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTGTTAT‑AAAAAATAAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGTTTTTCGAAATTCCAATTTGCGTTAATTGAATttc       >  1:401682/1‑137

                                                                                                                                                        TGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AACAACTCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGC      >  1:378007/1‑140

                                                                                                                                                        TGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAACAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTACAAATTGCGGTAATTGAATGTGa      >  2:260007/1‑139

                                                                                                                                                        TGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCGAAATTGCGGTAATTGAATGTGC      >  1:8916/1‑140

                                                                                                                                                        TGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGC      >  1:643393/1‑140

                                                                                                                                                        TGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGC      >  1:656237/1‑140

                                                                                                                                                        TGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAAAAATCATTGATTAAATAATAATTTAGCTCTTCGAAATTCCAAATTGCGGTAATAGAATGTGC      >  2:700425/1‑140

                                                                                                                                                        TGACACTACATACAGCATTATGCACAAAAATAAGACAGTACTTATTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAATACTAATGTCTTAAATAATAAGTTTGCGTTTCGAAATGCCAAATTGCGGTAATTGAATGTGC      <  2:349971/140‑1

                                                                                                                                                         GACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGACATTCCAAATTGCGGTAATTGAATGTGCT     >  2:697979/1‑140

                                                                                                                                                         GACACTACATACAGCATTTGTCAAAAAAATAAGACAGTAATTTTTTAT‑ACAAAATCAACAAACAAGACCTTAGCCAACACTAATGCCTTAACTAATAATTCTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCT     >  1:196942/1‑140

                                                                                                                                                          ACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTT    >  2:577490/1‑140

                                                                                                                                                          ACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGAAATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTT    >  1:176870/1‑140

                                                                                                                                                           CACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTT   >  1:446937/1‑140

                                                                                                                                                           CACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGCAATTGAATGTGCTTT   >  2:297811/1‑140

                                                                                                                                                            ACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTT  <  2:73813/140‑1

AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/901‑1057

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcttatttttgtgacaCTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTAT‑AAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTT  <  NC_012417/1071‑933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.