New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 1057840 (0.770)6 (0.010) 6/222 NT 0.75% coding (138/192 nt) USA300HOU_RS15665 hypothetical protein
?NC_012417 = 1071 865 (0.930)coding (124/192 nt) USA300HOU_RS15665 hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1160 total aligned reads displayed.

AAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAA  >  NC_012417/932‑1210
                                                                                                                                            |                                                                                                                                           
aaaaaGCAAATTCAATTACCGCAGTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTTTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAg                                                                                                                                             <  2:575314/140‑1 (MQ=255)
  aaaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtg                                                                                                                                           >  1:80847‑M2/1‑138 (MQ=255)
    aGCACATTCAATTACCGCAATTTGGAATGTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtc                                                                                                                                         >  2:697979‑M2/1‑136 (MQ=255)
     gCACATTCAAGTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                                                                                                                                        >  2:478397‑M2/1‑135 (MQ=255)
     aagagtgcaattgccGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                                                                                                                                        >  1:98110‑M2/8‑135 (MQ=255)
      cacaTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcac                                                                                                                                       <  1:19075‑M2/140‑7 (MQ=255)
       acaTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcaca                                                                                                                                      <  2:31873‑M2/140‑8 (MQ=255)
        caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaa                                                                                                                                     <  2:85026‑M2/140‑9 (MQ=255)
        caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATATTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTTGATGTAGtctcacac                                                                                                                                     <  2:612196‑M2/140‑9 (MQ=255)
         aTTCAAATACCGCAATTTGGGATTTCGAAAAGCAAAATTAATATTTAAAACATTAGTGGTTACTAATGTCTTTTTTTTTGATTTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaa                                                                                                                                     >  1:144266‑M2/1‑132 (MQ=255)
           tCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaa                                                                                                                                  <  2:436828‑M2/140‑12 (MQ=255)
              aTTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataa                                                                                                                               <  1:687784‑M2/140‑15 (MQ=255)
              aTTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtggcacaacaataa                                                                                                                               <  1:589716‑M2/140‑15 (MQ=255)
                  ccGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑AGAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagaca                                                                                                                           <  2:660306‑M2/140‑19 (MQ=255)
                     cAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAAc                                                                                                                        >  1:398436/1‑140 (MQ=255)
                       aTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGc                                                                                                                      <  1:6086/140‑1 (MQ=255)
                        ttttGAATTTCGAAAAGCAAAATTATTATTTAAGACATTGGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa                                                                                                                     <  2:189001/140‑1 (MQ=255)
                        tgtGGAATTACGAAAAGCAAACGTATCATTTAAGACATCAGTGTTGACTAGTGTCTTTTTTGTTGATTTTGT‑AACCAAAAGTACTGTCTTATGTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa                                                                                                                     <  1:440110/138‑1 (MQ=18)
                            gAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat                                                                                                                 <  1:428380/140‑1 (MQ=255)
                             aaTTTCGAAAAGCAGAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatata                                                                                                                <  1:251423/140‑1 (MQ=255)
                               tttCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATAtt                                                                                                              >  1:649722/1‑140 (MQ=255)
                                     aaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTca                                                                                                        <  1:600019/140‑1 (MQ=255)
                                      aaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTcac                                                                                                       <  2:241046/140‑1 (MQ=255)
                                      aaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTcac                                                                                                       <  2:377193/140‑1 (MQ=255)
                                       aGCAAAGTTATTATTAAAGACATTAGTGCTGACTGATGTGTTTTTGGTTGATTTGTT‑ATAAAAAAGTACTGTCTTATGTTTGGGACAGATGCGGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTcaca                                                                                                      <  1:621950/140‑1 (MQ=255)
                                        gCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACaa                                                                                                     >  1:740523/1‑140 (MQ=255)
                                           aaaTTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACaaaaa                                                                                                  <  1:100891/140‑1 (MQ=255)
                                             gttattattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATa                                                                                                <  2:687889/139‑1 (MQ=255)
                                             attattattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATa                                                                                                >  2:180247/1‑140 (MQ=255)
                                             attattattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATa                                                                                                >  1:459002/1‑140 (MQ=255)
                                                attattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGa                                                                                             <  1:659036/140‑1 (MQ=255)
                                                attattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATAAATTGTGTCACAAAAATAAGa                                                                                             >  1:124540/1‑140 (MQ=255)
                                                   attTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAg                                                                                          >  2:253347/1‑140 (MQ=255)
                                                     ttAAGACATTAGTGTTGACTAATGGCTTTTTTGTTGAGTTTTT‑ATAACAAAGCACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTa                                                                                        <  1:26372/140‑1 (MQ=255)
                                                       aaGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACa                                                                                      <  1:131816/140‑1 (MQ=255)
                                                       aaGACATGAGTGCTGACTAATGTCTTTTTTGTTGATGTTTT‑AGAAAGAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACa                                                                                      <  2:510697/140‑1 (MQ=37)
                                                        aGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTGTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg                                                                                     <  1:196839/140‑1 (MQ=255)
                                                         gACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGc                                                                                    >  2:332614/1‑140 (MQ=255)
                                                                gtgtTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTAt                                                                             <  1:37960/140‑1 (MQ=255)
                                                                 tgtTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATGTCTTGTGTCACAAAAATAAGACAGTACCGCTTTTTATg                                                                            >  2:40798/1‑140 (MQ=255)
                                                                  gtTGACTAAGGTCTTTTTGGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGa                                                                           <  1:712277/140‑1 (MQ=255)
                                                                     gACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGatat                                                                        >  1:732428/1‑140 (MQ=255)
                                                                      aCTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc                                                                       <  2:266260/140‑1 (MQ=255)
                                                                       cTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCTCAAAAATAAGTCAAAAGCAATATATTGTTTCACAAAAATAAAACAACACACCTTTTTATTATATCa                                                                      >  2:551741/1‑140 (MQ=25)
                                                                       cTAATGTCTTGTTTGTTGATTCTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCa                                                                      <  1:296804/140‑1 (MQ=255)
                                                                        tAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAc                                                                     <  1:532661/140‑1 (MQ=255)
                                                                        tAATGTATTTTTTGATGATTTCTT‑AGAAAAAAGTACTGTCTTATTTATGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAc                                                                     <  2:29521/140‑1 (MQ=38)
                                                                         aaTGTCTTTTTTATTGAGTTTTT‑ATAAAAAAGTACTGTCGTATTTTTGTGACAAATGCTGTATGCAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACt                                                                    <  2:673597/140‑1 (MQ=255)
                                                                            gTCTTTTTTGTTGATTTTTT‑ATAAAATAGTACTGTCTTATTTTTGTGACATATGCTGTATGTAGTGTCACTAAAATAAGACAAACTCTATATATTGTGTAACATAAATAAGACAGTCAAGCTTTGTATGATATCACttca                                                                 >  2:36404/1‑138 (MQ=37)
                                                                              cTTTTTTGTTGATTTTTT‑ATAATACTGTACTATCCCATCTCTGCCTCGCTGGCAGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATACGACAGTACAGCTTTGTATGATATCACTTTaaa                                                               <  1:753124/140‑1 (MQ=255)
                                                                                tttttGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACttttacat                                                             >  2:35453/1‑135 (MQ=255)
                                                                                tttttGTTGATTTTTT‑ATAAAAAAGTACTGTCATATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAAt                                                             <  1:497716/140‑1 (MQ=255)
                                                                                 ttttGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTGGTGGGACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATa                                                            <  1:175842/140‑1 (MQ=255)
                                                                                  tttGTTGATTTTTT‑AAAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAc                                                           <  1:482755/140‑1 (MQ=255)
                                                                                   ttgttgATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGTCATATGCTATAAGTAGTGTCACACAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACACCTCTCTATGATCTCACTCTaaactccc                                                          >  2:343051/1‑135 (MQ=255)
                                                                                     gttgATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCtt                                                        >  2:594252/1‑140 (MQ=255)
                                                                                      ttgATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTa                                                       >  1:700183/1‑140 (MQ=255)
                                                                                           ttttt‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATTATATCACTTTAAAATACCTTAAAAcc                                                  >  2:619478/1‑140 (MQ=255)
                                                                                              gt‑ataAAAAGGTACTGTCTTATTTTGAGAACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCt                                               <  2:757283/139‑1 (MQ=38)
                                                                                               t‑ataAAGAAGTACTTTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTg                                              <  2:202934/140‑1 (MQ=255)
                                                                                               t‑ataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTg                                              >  2:501241/1‑140 (MQ=255)
                                                                                               t‑ataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTg                                              >  2:398647/1‑140 (MQ=255)
                                                                                                 ataAAAAATTACTGTCTTATTTATGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTgg                                             <  2:125307/140‑1 (MQ=255)
                                                                                                 ataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATATGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTgg                                             >  1:338718/1‑140 (MQ=255)
                                                                                                  taAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGa                                            >  1:47405/1‑140 (MQ=255)
                                                                                                    aaaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATATAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATAATATCACTTAAAAATACCTTAAAACCCCTggctt                                          >  2:46072/1‑137 (MQ=255)
                                                                                                     aaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTATGTATGATATCACTTTAAAATACCTTAAAACCTCTGGAAtt                                         >  2:220522/1‑140 (MQ=255)
                                                                                                        aGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCCCAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCt                                      >  1:364455/1‑140 (MQ=255)
                                                                                                          tACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACCGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTgg                                    >  1:163791/1‑140 (MQ=255)
                                                                                                           aCTGTCTTATTTTTGTGACAAGTGCTGTATGTAGTGTCACAAAAATCTGAGACCGACGCGAGGGTGTCTCCCAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGc                                   <  2:162230/140‑1 (MQ=21)
                                                                                                            cTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCt                                  <  2:521380/140‑1 (MQ=255)
                                                                                                            cTGTCTGAGTTTGGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCt                                  <  2:282420/140‑1 (MQ=255)
                                                                                                             tGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCtt                                 >  2:7107/1‑140 (MQ=255)
                                                                                                              gTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCttt                                >  1:569533/1‑140 (MQ=255)
                                                                                                                      tttGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGAcc                        <  2:391066/140‑1 (MQ=255)
                                                                                                                       tggagACAAATGCTGTATGTAGGGTCACCAAAATAAGACAACCGCAAGGTATTGTGTCACAAAAATAAGACGGTACAGCTTTGTATGATATCCCTTTAAAATACCTTACAACCCCTGGAATTTCTGGCTGTGCCAGACCt                       <  1:217607/136‑1 (MQ=25)
                                                                                                                        tgtgACAAATGCTGTGTGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTa                      <  2:134485/140‑1 (MQ=255)
                                                                                                                         gtgACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTAt                     <  1:233225/140‑1 (MQ=255)
                                                                                                                          tgACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATc                    >  1:307119/1‑140 (MQ=255)
                                                                                                                          tgACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATc                    <  1:55062/140‑1 (MQ=255)
                                                                                                                          tgACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATc                    >  2:586135/1‑140 (MQ=255)
                                                                                                                           gACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCa                   <  2:727331/140‑1 (MQ=255)
                                                                                                                             cAAATGCTGTATGGAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCAtt                 <  2:423061/140‑1 (MQ=255)
                                                                                                                              aaaTGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCAttt                <  1:272871/140‑1 (MQ=255)
                                                                                                                              aaaTACTGTATGTGGTGACACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCAttt                <  2:734239/140‑1 (MQ=255)
                                                                                                                               aaTGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCAtttt               <  1:41145/140‑1 (MQ=255)
                                                                                                                               aaTGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATAATGTTTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCAttca               <  1:321538/140‑3 (MQ=255)
                                                                                                                                aTGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCAttttt              >  1:115299/1‑140 (MQ=255)
                                                                                                                                    tgtatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAAt          <  1:639339/140‑1 (MQ=255)
                                                                                                                                        tgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATa      >  1:206428/1‑140 (MQ=255)
                                                                                                                                         gtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAg     <  2:149166/140‑1 (MQ=255)
                                                                                                                                         gtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAg     >  1:579290/1‑140 (MQ=255)
                                                                                                                                         gtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAg     <  1:351101/140‑1 (MQ=255)
                                                                                                                                         gtaGTGACACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAg     <  2:744145/140‑1 (MQ=255)
                                                                                                                                          taGTGTCACAAAAATACGACAAACGCAATATATTGTGTCACAAAAATAAGACAGCACAGCTATGTATGATATCACTTTAAAATACCTTAACACCCCTGGAATTCCTGACTTTCCTAACACTATCATTTTTTaagtttcgc    >  1:514651/1‑133 (MQ=25)
                                                                                                                                          taGTGTAACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGc    <  2:644965/140‑1 (MQ=255)
                                                                                                                                          gaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGc    <  2:113141/139‑1 (MQ=255)
                                                                                                                                            gtgtCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCaa  <  2:306864/140‑1 (MQ=255)
                                                                                                                                            gtgtCACAAAAATAAGACAAACGCAATATATTGGGTCACAAAAATAAGACAGGACAGCTTTGTATGATATCACTTTAAAATACCTTAAATCACCTGGAATTGCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCaa  <  2:229679/140‑1 (MQ=25)
                                                                                                                                            gtgtCACAAAAATAAGACAAACGCAAGATATCGTGTCACAAAAATATGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTCCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCaa  <  2:53838/140‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                           
AAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTT‑ATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAA  >  NC_012417/932‑1210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.