New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 1057840 (0.770)6 (0.010) 6/222 NT 0.75% coding (138/192 nt) USA300HOU_RS15665 hypothetical protein
?NC_012417 = 1071 865 (0.930)coding (124/192 nt) USA300HOU_RS15665 hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1328 total aligned reads displayed.

AACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTT  >  NC_012417/918‑1196
                                                                                                                                           |                                                                                                                                           
   aGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGGATTATTTTTGTGACAAAt                                                                                                                                          >  2:224280/1‑140 (MQ=255)
   aGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTGCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAAt                                                                                                                                          <  1:390505/140‑1 (MQ=255)
    gACGAAGAAGAAAAAGCACATTCAATTCCCGAAATTGGGAATATCGAAAAGCAAAATTATAATTCAAGCCATTACTGTTGACTAGTGTCTGTTTAGTGGATTGGTTATCGAAAAGGAGTGGCTTATTTATGTGACATATg                                                                                                                                         >  2:484458/1‑140 (MQ=255)
    gACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTATTATTTTTGTGACAAATg                                                                                                                                         >  1:113347/1‑140 (MQ=255)
     aCGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGc                                                                                                                                        >  2:193477/1‑140 (MQ=255)
        aagaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgt                                                                                                                                     <  1:564600/140‑1 (MQ=255)
         agaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgta                                                                                                                                    >  2:134596/1‑140 (MQ=255)
         agaagaaAAAGCAAATTCCATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgta                                                                                                                                    >  1:215086/1‑140 (MQ=255)
           cagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtatg                                                                                                                                  <  1:7597/139‑1 (MQ=255)
           aagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTGATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtatg                                                                                                                                  <  2:761124/140‑1 (MQ=255)
             gaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtatgta                                                                                                                                <  2:438375/140‑1 (MQ=255)
                aaaGCACATTTAATTATCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtg                                                                                                                             >  1:594878‑M2/1‑138 (MQ=255)
                 aaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgt                                                                                                                            >  2:577490‑M2/1‑137 (MQ=255)
                 aaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgt                                                                                                                            <  2:560051‑M2/140‑4 (MQ=255)
                   gCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTCTTTCTTGATTTTTTCGATAGTAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                                                                                                                          >  2:542104‑M2/1‑135 (MQ=255)
                   aagagtgcaattgccGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                                                                                                                          >  1:98110‑M2/8‑135 (MQ=255)
                    gaaattcAATTAACGCAAATTGGAATTTCGAAAAACAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTTATTTTTTATAACAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcac                                                                                                                         >  1:401682‑M2/4‑134 (MQ=255)
                    cacaTTCAATTGCCGCAATTNGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcan                                                                                                                         >  1:633381‑M2/1‑134 (MQ=255)
                      caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaa                                                                                                                       <  1:180150‑M2/140‑9 (MQ=255)
                         tCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACCAATGCTGTATGTAGtgtcacaaaaa                                                                                                                    <  1:35108‑M2/140‑12 (MQ=255)
                         tCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaa                                                                                                                    >  2:682846‑M2/1‑129 (MQ=255)
                              tACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataaga                                                                                                               >  2:423617‑M2/1‑124 (MQ=255)
                               aCCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagac                                                                                                              >  2:712563‑M2/1‑123 (MQ=255)
                                ccGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagaca                                                                                                             <  2:392287‑M2/140‑19 (MQ=255)
                                ccGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTAGAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagaca                                                                                                             <  2:660306‑M2/140‑19 (MQ=255)
                                     aTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATTAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGc                                                                                                        >  1:477883/1‑140 (MQ=255)
                                      tttGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa                                                                                                       <  1:306679/140‑1 (MQ=255)
                                         ggAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTAGGTAGTGTCACAACAATCAGACAAACGCAata                                                                                                    >  1:65388/1‑140 (MQ=255)
                                          taaTTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat                                                                                                   <  2:509426/139‑1 (MQ=255)
                                          gAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat                                                                                                   <  1:150803/140‑1 (MQ=255)
                                          gAATGTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTTATTAATGTCTTTTTTGTTGATTTTTTATCAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat                                                                                                   <  2:614161/140‑1 (MQ=255)
                                           agtttCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatata                                                                                                  <  2:751986/138‑1 (MQ=255)
                                               tCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTGGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATtgt                                                                                              <  1:319591/140‑1 (MQ=255)
                                                   aaggCAAAACTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTca                                                                                          <  1:607083/137‑1 (MQ=255)
                                                    aaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTcac                                                                                         <  2:377193/140‑1 (MQ=255)
                                                         aaaTTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACaaaaa                                                                                    <  1:100891/140‑1 (MQ=255)
                                                          aaTTATTTATTAAGACATCAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAAt                                                                                   <  1:587131/140‑1 (MQ=255)
                                                          aaTTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAAt                                                                                   <  2:410387/140‑1 (MQ=255)
                                                              attattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATAAATTGTGTCACAAAAATAAGa                                                                               >  1:124540/1‑140 (MQ=255)
                                                               ttattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGAc                                                                              >  2:184113/1‑140 (MQ=255)
                                                                   ttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTa                                                                          <  2:229704/140‑1 (MQ=255)
                                                                   ttAAGACATTAGTGTTGACTAATGGCTTTTTTGTTGAGTTTTTATAACAAAGCACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTa                                                                          <  1:26372/140‑1 (MQ=255)
                                                                    tAAGATATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTAc                                                                         <  2:302818/140‑1 (MQ=255)
                                                                      aGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg                                                                       <  1:484755/140‑1 (MQ=255)
                                                                       gACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATGATGCAGGACTACCATATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGc                                                                      <  2:739069/140‑1 (MQ=38)
                                                                        aCATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt                                                                     <  2:675169/140‑1 (MQ=255)
                                                                        aCATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt                                                                     <  1:82398/140‑1 (MQ=255)
                                                                         ccttAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCACTATATTGTGTCACAAAAATAAGACAGTACAGCtt                                                                    <  1:66502/138‑1 (MQ=255)
                                                                         cATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAACAACAAACAGTACAGCtt                                                                    >  2:117527/1‑140 (MQ=255)
                                                                             aGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTa                                                                <  1:232872/140‑1 (MQ=255)
                                                                               tgtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATg                                                              <  2:126262/140‑1 (MQ=255)
                                                                               tgtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATg                                                              >  1:194030/1‑140 (MQ=255)
                                                                                   gACTAATGTCTTTTTTTTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGatat                                                          <  1:734801/140‑1 (MQ=255)
                                                                                    aCTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTGTGATATc                                                         >  1:442069/1‑140 (MQ=255)
                                                                                    aCTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc                                                         >  1:272953/1‑140 (MQ=255)
                                                                                       aaTGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAGATAAGACAGTACAGCTTTGTATGATATCACt                                                      >  2:353239/1‑140 (MQ=255)
                                                                                             ttttttGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTaaaa                                                >  2:59034/1‑140 (MQ=255)
                                                                                                tttGTGGATTTTTTATAAAAAAGTACTGCCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAc                                             <  1:36402/140‑1 (MQ=255)
                                                                                                 ttgttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAAttaa                                            >  2:155024/1‑137 (MQ=255)
                                                                                                 ttgttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAcc                                            >  1:572420/1‑140 (MQ=255)
                                                                                                   gttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTTCAGCTTTGTATGATATCACTTTAAAATACCtt                                          <  2:239316/140‑1 (MQ=255)
                                                                                                   gttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCtt                                          <  2:645893/140‑1 (MQ=255)
                                                                                                      gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGACACCCAAATAAGAAAGTACACCTTTGTATGATATCACTTTAAAATACCTTaaa                                       >  2:85490/1‑140 (MQ=38)
                                                                                                           tttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTAAAGCTTTGTATGATATTACTTTAAAATACCTTAAAAcccc                                  <  1:745111/140‑1 (MQ=255)
                                                                                                           tttATAAAAAAGTACTGTCTTATATGGGCGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTAACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAcccc                                  >  2:625183/1‑140 (MQ=38)
                                                                                                             tataAAGAAGTACTTTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTg                                <  2:202934/140‑1 (MQ=255)
                                                                                                              ataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATCAGACAAACGCAATATATTGTGGCACCACAATAAGACAGTACCGCTTTGTATGATATCACGTTAAAATACCTTACAACACCTgc                               >  1:543685/1‑139 (MQ=37)
                                                                                                                     aGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTTGAATTTCt                        >  1:132738/1‑140 (MQ=255)
                                                                                                                        aCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGc                     >  1:705533/1‑140 (MQ=255)
                                                                                                                         cTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCt                    <  2:521380/140‑1 (MQ=255)
                                                                                                                         cTGCCTTATCTCTGCGACACATGCTTTATGTAGTCTCACAAAACTAAGACAACCGCACTATATTGTGTCACAAGAATACGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCt                    <  1:338047/140‑1 (MQ=25)
                                                                                                                          tGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTAAAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCtt                   >  2:313771/1‑140 (MQ=255)
                                                                                                                          tGTCTTATTTTTGTGACAAATGATGTAAGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCtt                   <  2:696450/140‑1 (MQ=255)
                                                                                                                           gTCTTATTTTTGTGACActacatacagcatttgtcacaaaaataagacagtacttttttatacaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaattccgaattgcggt                  >  2:169902‑M1/1‑17 (MQ=255)
                                                                                                                           gTCTTATTTTTGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaattgcaaagtgcggt                  >  1:376157‑M1/1‑17 (MQ=255)
                                                                                                                           gTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCACTACATTGTGTTACAAGAATGGGTGGACAGAACAGGGAATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTCGCttt                  >  2:342140/1‑140 (MQ=19)
                                                                                                                           gTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCttt                  >  2:290895/1‑140 (MQ=255)
                                                                                                                           gTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCGTAAAACCCCTAGACTTTCTGGCttt                  >  2:400045/1‑140 (MQ=255)
                                                                                                                              ttATTTTTGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgccattccaaatttcggtaat               >  2:362984‑M1/1‑14 (MQ=255)
                                                                                                                                aTTTTTGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattg             <  1:615665‑M1/140‑129 (MQ=255)
                                                                                                                                aTTTTTGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattg             >  1:646293‑M1/1‑12 (MQ=255)
                                                                                                                                aTTTTTGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattg             >  1:429475‑M1/1‑12 (MQ=255)
                                                                                                                                aTTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAg             <  1:416069/140‑1 (MQ=255)
                                                                                                                                  ttttGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGAc           >  2:454350/1‑140 (MQ=255)
                                                                                                                                   tttGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattgaat          <  1:463429‑M1/140‑132 (MQ=255)
                                                                                                                                    ttGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattgaatg         >  2:25317‑M1/1‑8 (MQ=255)
                                                                                                                                    ttGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattgaatg         <  1:693846‑M1/140‑133 (MQ=255)
                                                                                                                                    ttGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATGGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCt         <  2:278629/140‑1 (MQ=255)
                                                                                                                                     tgtgACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattgaatgt        >  2:705868‑M1/1‑7 (MQ=255)
                                                                                                                                     tgtgACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattgaatgt        >  1:200200‑M1/1‑7 (MQ=255)
                                                                                                                                     tgcgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaattcaacattgcggtaattgattat        >  2:732896‑M1/4‑7 (MQ=255)
                                                                                                                                       tgACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATc      <  1:165014/140‑1 (MQ=255)
                                                                                                                                       tgACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATc      <  1:503008/140‑1 (MQ=255)
                                                                                                                                        gACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAACCCCCTGGAATTTCTGGCTTTGCCAGACCTATCa     >  1:525497/1‑140 (MQ=255)
                                                                                                                                        gACAAACGCAGCATGGACTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCa     <  1:244994/140‑1 (MQ=37)
                                                                                                                                         acactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattgaatgtgctt    >  2:600630‑M1/1‑3 (MQ=255)
                                                                                                                                          cactacatacagcatttgtcacaaaaataagacagtacttttttatacaaaagcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaagtccaaattgcggtaattgaatgtgcttt   >  1:722127‑M1/1‑2 (MQ=255)
                                                                                                                                          cactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattgaatgtgcttt   >  1:294499‑M1/1‑2 (MQ=255)
                                                                                                                                          cAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCAtt   >  2:32625/1‑140 (MQ=255)
                                                                                                                                           aaaTGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCACGACCTATCAttt  >  2:261679/1‑140 (MQ=255)
                                                                                                                                           |                                                                                                                                           
AACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTT  >  NC_012417/918‑1196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.