BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 3069	309 (0.280)	3 (0.000)	3/244	NT	2.0%	intergenic (‑395/–)	USA300HOU_RS14900/–	hypothetical protein/–
*	?	NC_012417	= 3118	0 (0.000)	3 (0.000)	3/244	NT	2.0%	intergenic (‑444/–)	USA300HOU_RS14900/–	hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 162 total aligned reads displayed.

TTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2924‑3069

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaaGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTA  <  NC_012417/3118‑2980

TTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAA                                                                                                                                                    <  1:102529/140‑1

TTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAA                                                                                                                                                    <  1:278660/140‑1

 TGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAACCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAAT                                                                                                                                                   <  1:633937/140‑1

 TGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAAT                                                                                                                                                   <  1:335752/140‑1

 TGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATAGTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAAT                                                                                                                                                   <  2:137831/140‑1

  gtgtgTTGAAACGAGTGTGAACGAGATTCTTCTTGTCATGATACTATATAGAAATAACTCGATTTTATATATATAGATGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATA                                                                                                                                                  <  2:376090/135‑1

  GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAGTAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAAGAAAATTAGACATTA                                                                                                                                                  >  2:471669/1‑140

  GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTCAAAGTGTTTCAGAGCCTGAAAGTAAAATTTGACAATA                                                                                                                                                  <  1:147149/140‑1

  GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATA                                                                                                                                                  >  1:504862/1‑140

  GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATA                                                                                                                                                  <  1:155935/140‑1

  GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATA                                                                                                                                                  >  1:303687/1‑140

   TTTTTTGACTCTATTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAA                                                                                                                                                 <  1:488674/140‑1

   TTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAA                                                                                                                                                 <  1:573948/140‑1

   TTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAA                                                                                                                                                 <  1:656000/140‑1

   TTTTATGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGAGACTATATAGAAATAACTCGCTTTTAGATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAA                                                                                                                                                 <  1:488092/140‑1

    TTTTTGAAACGTGTGTAAAACAGTTTATTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAA                                                                                                                                                <  2:291720/140‑1

    TTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAAGTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACGCTAAA                                                                                                                                                >  1:133171/1‑140

    TTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAA                                                                                                                                                <  2:587963/140‑1

     TTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAA                                                                                                                                               <  2:411105/140‑1

     TTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAA                                                                                                                                               <  1:515112/140‑1

     TTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTCAAAGGAAAATCTCACAATAAAA                                                                                                                                               >  1:726994/1‑140

     TTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATGTTCTATATATAGCTGTAACTATTGATATTACAGTGTTTAAACGTGTCTTTGTGCGTGAAAGGAAAATTAGACAATAAAA                                                                                                                                               >  2:387379/1‑140

      gtgGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA                                                                                                                                              <  2:709077/137‑1

      TTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA                                                                                                                                              <  2:672316/140‑1

      TTTGAAACGAGTGTGAACGAGTTTCTTCTTATCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGAGATAACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA                                                                                                                                              <  2:127564/140‑1

      TTTGAAACAAGATTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA                                                                                                                                              <  2:755404/140‑1

         GAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATTTAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAATGGAAAGTTTGACAATATAAgacc                                                                                                                                           >  1:118135/1‑136

         GAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAATTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAgaac                                                                                                                                           >  1:107492/1‑136

                                                              GATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTAT                                                                                     <  1:298733/140‑1

                                                                                                          ACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGT                                         <  1:409729/140‑1

                                                                                                                                           ATAAAATGA‑CCCTCAGTATGATTTTATTTTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTTCTTTCACGCACACAAACACGTTTAAACACTGTAATATCAACAGTTACAGCCATATATATAAAATC        <  2:60899/140‑1

                                                                                                                                           ATAAAAAGA‑TCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATC        <  2:389178/140‑1

                                                                                                                                           ATAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACTCCTTAATAATATCGCTGGGGTTTATTATTGTCAAATTTTCCTTTCACGCACAAAAACATGTTTAAACCCTGTTCTCTCTTCATTTAGAGCTATATATATAAAATC        <  2:463374/140‑1

                                                                                                                                           ATAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATC        <  2:402808/140‑1

                                                                                                                                           ATAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATC        <  2:79631/140‑1

                                                                                                                                           ATAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATC        <  1:125750/140‑1

                                                                                                                                           ATAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATC        <  1:601290/140‑1

                                                                                                                                           ATAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATC        <  2:102457/140‑1

                                                                                                                                           ATAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACAGTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATa        >  1:316588/1‑139

                                                                                                                                            tcAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG       <  2:682698/138‑1

                                                                                                                                            gAAAAAGA‑CCCCCAGTACTATTTAATATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG       <  2:421725/139‑1

                                                                                                                                            TAAAAAGA‑CTCCCCGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG       <  2:844/140‑1

                                                                                                                                            TAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAATAAATGTAATATCAACAGTTACAGCTATATATATAAAATCG       >  1:678647/1‑140

                                                                                                                                            TAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG       <  1:428233/140‑1

                                                                                                                                            TAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG       <  1:741913/140‑1

                                                                                                                                            TAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG       <  2:737383/140‑1

                                                                                                                                            TAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG       <  1:706555/140‑1

                                                                                                                                            TAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG       <  2:14996/140‑1

                                                                                                                                            TAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTGTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG       <  1:679809/140‑1

                                                                                                                                            TAAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTAGTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTGCAGCTATAGATTAAAAATgg       >  1:547204/1‑138

                                                                                                                                             AAAGAGA‑CCCCCATTATCATTTAAGCTTCGACTCCTTCATAATATAACTGCGGTTTTTTATTGTCATATTTTCCTTTCACTCACTAATACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGA      <  1:199904/140‑1

                                                                                                                                             AAAAAGATCCCACAG‑ATGATTTCAGATTCGACAACTTAATAATATAACTCGGGTTTTTTATTGACAAATTTTACTTTCACGCACAAAAACACGTTTAAACACCGTAATATCAACAGTTACAGCTATATATATAAAATCGA      <  2:116339/140‑1

                                                                                                                                             AAAAAGA‑GCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGA      <  1:337767/140‑1

                                                                                                                                             AAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCaa      >  2:252805/1‑138

                                                                                                                                             AAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGA      <  2:392261/140‑1

                                                                                                                                             AAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGA      <  2:224950/140‑1

                                                                                                                                             AAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGA      >  2:741038/1‑140

                                                                                                                                             AAAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGA      >  2:313344/1‑140

                                                                                                                                             AAAAAGA‑CCCCCAGTAGTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGA      <  2:351244/140‑1

                                                                                                                                              tAAAGA‑CCCCCAGCATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     <  2:363384/139‑1

                                                                                                                                              AAAAGA‑CCGCCATTATGATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     <  1:413050/140‑1

                                                                                                                                              AAAAGA‑CCCCCGGTATTATTTAAGATTCGACACCTTAATAATATAACTGGTGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     <  2:65417/140‑1

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTATGATTCGAGATCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     <  2:302012/140‑1

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTAATATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     <  1:224372/140‑1

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTTTCTAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTTTAATATCAACAGTTACAGCTATTTTTATAAAATCGAG     >  2:418123/1‑140

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCACATTTTCCTTTCAAGCACAAACACACGCTTAAACACCGTAATCTCAACAGTTACAGCTATATATATAAAATCGAG     <  1:165441/140‑1

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     >  1:439900/1‑140

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     <  2:467748/140‑1

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     <  2:429685/140‑1

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     <  2:6172/140‑1

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     <  1:161545/140‑1

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     <  2:372971/140‑1

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     >  1:432267/1‑140

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     <  1:583769/140‑1

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     <  1:409486/140‑1

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     <  1:699235/140‑1

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTCTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     >  2:379905/1‑140

                                                                                                                                              AAAAGA‑CCCCCAGTATTATTATAGATTCGACACCTTAATAATATAACTAGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG     <  2:199179/140‑1

                                                                                                                                               AAAGT‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT    <  1:326513/140‑1

                                                                                                                                               AAAGA‑CCGCCATTATTATTTAATATTCGACCCCTTAATAATATAACTGTGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT    <  2:122210/140‑1

                                                                                                                                               AAAGA‑CCCCCAGTATTATTTAAGATTCGACAGCTTAATATTATAACTGGGGTTGTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT    <  2:85735/140‑1

                                                                                                                                               AAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT    <  1:390236/140‑1

                                                                                                                                               AAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT    <  1:268273/140‑1

                                                                                                                                               AAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT    <  1:469689/140‑1

                                                                                                                                               AAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT    >  2:314265/1‑140

                                                                                                                                               AAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT    <  2:279694/140‑1

                                                                                                                                               AAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT    <  2:693943/140‑1

                                                                                                                                               AAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT    <  1:706804/140‑1

                                                                                                                                               AAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT    <  2:580490/140‑1

                                                                                                                                               AAAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGACAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT    <  2:550320/140‑1

                                                                                                                                               AAAGA‑CCCCCAGGATTATTTAAGATTCGACACCTTAAGAATATAACTGAGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT    <  2:589125/140‑1

                                                                                                                                                AAGC‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTT   <  1:200225/140‑1

                                                                                                                                                AAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCATTCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACTGCTATATATATAAAATCCAGTT   >  2:560257/1‑140

                                                                                                                                                AAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTT   <  2:474339/140‑1

                                                                                                                                                AAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTT   <  1:82376/140‑1

                                                                                                                                                AAGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTT   <  1:424942/140‑1

                                                                                                                                                 AGA‑CCCCCCGTATTGATGAACATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTA  <  2:564506/140‑1

                                                                                                                                                 AGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCTAATTTTCCTTTCATGCATAAAAACACGCTTAAACACTGTACTATCAACTGTTACAGCTATATATATAAAATCGAtcaa  >  2:612568/1‑136

                                                                                                                                                 AGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTA  <  2:485976/140‑1

                                                                                                                                                 AGA‑CCCCCAGGATGATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTA  <  2:2869/140‑1

TTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2924‑3069

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaaGA‑CCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTA  <  NC_012417/3118‑2980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.