New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 3069309 (0.280)3 (0.000) 3/244 NT 2.0% intergenic (‑395/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 3118 0 (0.000)intergenic (‑444/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1054 total aligned reads displayed.

ATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2979‑3125
                                                                                                                                           |                                                                                                                                          
 tAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATCATCCTGGGGGTCt                                                                                                                                           <  2:2869‑M2/140‑2 (MQ=255)
  aaCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtt                                                                                                                                          <  2:474339‑M2/140‑3 (MQ=255)
   aCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCTCAGTTATATTCTTAAGGTGTCGAATCTTAAATAATCCTGGGGGTCttt                                                                                                                                         <  2:589125‑M2/140‑4 (MQ=255)
   aCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCACAGTTATATTATTAAGGGGTCGAATATTAAATAATAATGGCGGTCttt                                                                                                                                         <  2:122210‑M2/140‑4 (MQ=255)
    cTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGTGGGTCtttt                                                                                                                                        <  2:616708‑M2/140‑5 (MQ=255)
    cTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCCAATCTTAAATAATACTGGGGGTCtttt                                                                                                                                        >  1:493765‑M2/1‑136 (MQ=255)
    cTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACACCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACCGGGGGTCtttt                                                                                                                                        <  2:65417‑M2/140‑5 (MQ=255)
     tCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttt                                                                                                                                       <  2:224950‑M2/140‑6 (MQ=255)
     tCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttt                                                                                                                                       >  2:313344‑M2/1‑135 (MQ=255)
      cGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGACAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttta                                                                                                                                      <  1:679809‑M2/140‑7 (MQ=255)
      cGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttta                                                                                                                                      <  1:428233‑M2/140‑7 (MQ=255)
      cGATGTTATATATATAGCTGTAACTGCTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttta                                                                                                                                      >  1:6654‑M2/1‑134 (MQ=255)
       tctgttatatATAGAGGTTTAACTTTAGATATTAGAGTGGTTAAACGTGTTTGTGTGCGTGAAAGGAAAATTTGACAATAAACAACCCCAGTTATATTATTAATGTGTCGAATCTTAAATAATACTGGGGGTCtttttat                                                                                                                                     >  2:420383‑M2/5‑133 (MQ=255)
        aTTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATa                                                                                                                                    >  2:4325‑M2/1‑139 (MQ=255)
           ttATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgc                                                                                                                                 >  1:45039‑M2/1‑136 (MQ=255)
             atatagacaGCTGTAACTGTTGATATTAGAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAGatgcaa                                                                                                                               >  2:644117‑M2/1‑134 (MQ=255)
                tatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACACTAACAAACTGCAGTCATAATCATAATGTGTTGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatat                                                                                                                            >  1:178213‑M2/1‑131 (MQ=255)
                 atataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTGAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatata                                                                                                                           <  1:639848‑M2/140‑11 (MQ=255)
                   ataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGATGTCCAATCTTAAATAATACTGGGGGTCTTTTTTTatgcaatataat                                                                                                                         <  2:7004‑M2/140‑13 (MQ=255)
                    taGGTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataata                                                                                                                        >  2:520354‑M2/1‑127 (MQ=255)
                    taGCTGTAACTGTTGATAGTACAGTGTTTAAACGAATTTTTGTGCGTGAAAGGAAAATTTGACAATCCCAAAACCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACAGAAAATCTTTTTATatgcaatataata                                                                                                                        >  2:506313‑M2/1‑127 (MQ=255)
                     aGCTGTAACTGTTGATATTCCAGTGTTTAACCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATACTATTCAGGTGTCGAATCTTAAATAATACTGGGGGACTTTTTATatgcaatataatac                                                                                                                       <  1:275390‑M2/140‑15 (MQ=255)
                     aGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatac                                                                                                                       >  1:534855‑M2/1‑126 (MQ=255)
                     aGCGGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatac                                                                                                                       >  2:144242‑M2/1‑126 (MQ=255)
                       cTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGAGTGTTTTTAAATTTTGACAATAGAAAACCTCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataataata                                                                                                                     <  2:342975‑M2/140‑17 (MQ=255)
                        tGTAACTTATGCTATTAACGGTTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactac                                                                                                                    >  2:758843‑M2/1‑123 (MQ=255)
                        tGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactac                                                                                                                    <  1:705973‑M2/140‑18 (MQ=255)
                        tGGAACGGTTGATATGACAGTGTGGAAACGTGTTTGTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactac                                                                                                                    >  1:2527‑M2/1‑123 (MQ=255)
                         gTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactact                                                                                                                   <  1:336020‑M2/140‑19 (MQ=255)
                          tAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATGTTTGATAATACTGGGGGTCTTTTTATatgcaatataatactacta                                                                                                                  <  2:737777‑M2/140‑20 (MQ=255)
                          tAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactacta                                                                                                                  <  2:128865‑M2/140‑20 (MQ=255)
                          tAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTGAAATAATACTGGGGGGCTTTTTATatgcaatatcatactacta                                                                                                                  <  1:369293‑M2/140‑20 (MQ=255)
                           aaCTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactag                                                                                                                 <  1:730766‑M2/140‑21 (MQ=255)
                           aaCTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGAGTCTTTTTATatgcaatcacataatactag                                                                                                                 <  2:112582‑M2/140‑21 (MQ=255)
                            aCTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaat                                                                                                                              <  2:84454‑M2/126‑8 (MQ=255)
                             cTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAGAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaa                                                                                                               <  1:56987‑M2/140‑23 (MQ=255)
                             cTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagat                                                                                                               <  1:136394‑M2/140‑23 (MQ=255)
                              tGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaag                                                                                                              <  1:264014‑M2/140‑24 (MQ=255)
                               gTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATCACAAAACCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagt                                                                                                             <  1:288838‑M2/140‑25 (MQ=255)
                               gTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagt                                                                                                             >  2:101790‑M2/1‑116 (MQ=255)
                               gTTGATATTACAGTGTTTAAACGTGTTTTTCTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGTGGTCTTTTTCTatgcaatataatactactctacgt                                                                                                             <  2:533228‑M2/140‑25 (MQ=255)
                                  gATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATgtgcaatataatactactagaagtata                                                                                                          <  1:206695‑M2/140‑28 (MQ=255)
                                   atatTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTCTATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataa                                                                                                         <  1:404541‑M2/140‑29 (MQ=255)
                                    tcttacAGTGGTTGAACTTGTACTCGTGCTTTAAGGGAAAATTTGACAATAAAAACCCCTAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataac                                                                                                        >  1:513510‑M2/3‑111 (MQ=255)
                                    tatTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataac                                                                                                        <  1:553286‑M2/140‑30 (MQ=255)
                                    tatTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataac                                                                                                        >  1:100366‑M2/1‑111 (MQ=255)
                                     atTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataacc                                                                                                       >  1:119003‑M2/1‑110 (MQ=255)
                                     atTACAGTGTTTAAACGTGGTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTGATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactaaaagtctaacc                                                                                                       <  2:728442‑M2/140‑31 (MQ=255)
                                         cAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaa                                                                                                   <  1:163264‑M2/140‑35 (MQ=255)
                                              tttAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatact                                                                                                                      <  1:646994‑M2/116‑16 (MQ=255)
                                               ttAAACGAGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaag                                                                                             >  2:635462‑M2/1‑100 (MQ=255)
                                               ttAAAAGTGTTGTTGTGAGTGAAGGAAAAATCTGAGGATGAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaag                                                                                             >  2:156291‑M2/1‑100 (MQ=255)
                                                tAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGCTAAATTACGTATCCGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaaga                                                                                            >  1:756387‑M2/1‑99 (MQ=255)
                                                     gggtttTTGTGAGTGAAAGGAAAAGATGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataata                                                                                       >  2:661829‑M2/3‑94 (MQ=255)
                                                      tgtTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTACATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataa                                                                                      <  2:39813‑M2/140‑48 (MQ=255)
                                                       gtTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatatactactactagaagtataaccgaaaatcaagatactaaa                                                                                     <  2:194797‑M2/140‑49 (MQ=255)
                                                          tttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacg                                                                                  >  1:69084‑M2/1‑89 (MQ=255)
                                                          tgtgtgcgTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGGCTTTTTAGatgcaatataatactactagaagtataaccgaaaatcaagataataaaacg                                                                                  >  1:129940‑M2/3‑89 (MQ=255)
                                                               gCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatacaatactactagaagtataaccgaaaatcaagataataaaacgttaaa                                                                             >  1:29802‑M2/1‑84 (MQ=255)
                                                                cGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactaaaagtataaccgaaaatcaagataataaaacgttaaaa                                                                            <  2:412139‑M2/140‑58 (MQ=255)
                                                                 gTGAAAAGAAAATGTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaag                                                                           >  2:352746‑M2/1‑82 (MQ=255)
                                                                       ggAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTAGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgtgaaaggatatga                                                                     <  1:349981‑M2/140‑65 (MQ=255)
                                                                        gAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCGTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgac                                                                    >  1:387823‑M2/1‑75 (MQ=255)
                                                                          aaaTTATACAATAAAGAGCCCCAGTTATATTATTAAGCTGTCTAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacga                                                                  >  2:669737‑M2/1‑73 (MQ=255)
                                                                           aaTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaa                                                                 <  1:145994‑M2/140‑69 (MQ=255)
                                                                            aTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaa                                                                <  2:240825‑M2/140‑70 (MQ=255)
                                                                                gACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtg                                                            <  2:17057‑M2/140‑74 (MQ=255)
                                                                                              ccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaacgtgggaaacaacgccca                                              <  1:188876‑M2/140‑88 (MQ=255)
                                                                                               cAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccat                                             <  1:154764‑M2/140‑89 (MQ=255)
                                                                                                aGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatg                                            >  1:58340‑M2/1‑51 (MQ=255)
                                                                                                 gTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatgg                                           <  1:744406‑M2/140‑91 (MQ=255)
                                                                                                     tattatTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagag                                       <  1:107557‑M2/140‑95 (MQ=255)
                                                                                                     tattatTAAGGTGTCAAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagag                                       >  2:557048‑M2/1‑46 (MQ=255)
                                                                                                       ttattaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagag                                     <  1:231439‑M2/140‑97 (MQ=255)
                                                                                                       ttattaAGGTGCCGAAACGTAAATAATAATGGGGGTATTATTATatgcaatataataatactagaagtataagcgaaaaacaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaa                                     >  2:37005‑M2/1‑44 (MQ=255)
                                                                                                        tattaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaataaagataataaaacgttaaaagatatgacgaaaagtggaaaacaacgcgaatggagagaaa                                    <  2:260515‑M2/140‑98 (MQ=255)
                                                                                                         attaAGGTGTCGAATCTTAAATAATACTGGGGGACCTTTTATatgcaatataatactactagaagtataaccgaaaaccaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaga                                   <  2:463368‑M2/140‑99 (MQ=255)
                                                                                                           taAGGTGTCGAATCTTACACAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaaga                                 <  2:275496‑M2/140‑101 (MQ=255)
                                                                                                            aaGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaa                                >  1:590618‑M2/1‑39 (MQ=255)
                                                                                                             aGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaa                               >  1:613854‑M2/1‑38 (MQ=255)
                                                                                                              ggTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaa                              >  1:437708‑M2/1‑37 (MQ=255)
                                                                                                                tgtCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaaagaccatggagagaaaagaaaata                            <  2:689373‑M2/140‑106 (MQ=255)
                                                                                                                   cGAATCTAAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagat                         >  2:490039‑M2/1‑32 (MQ=255)
                                                                                                                    gAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaacatagata                        <  2:449843‑M2/140‑110 (MQ=255)
                                                                                                                    gAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagata                        <  2:678002‑M2/140‑110 (MQ=255)
                                                                                                                     aaTCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataa                       >  1:474339‑M2/1‑30 (MQ=255)
                                                                                                                       tCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatg                     >  2:601290‑M2/1‑28 (MQ=255)
                                                                                                                       tCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatg                     >  1:318345‑M2/1‑28 (MQ=255)
                                                                                                                       tCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatg                     <  1:601073‑M2/140‑113 (MQ=255)
                                                                                                                        cTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcacgataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgt                    >  2:380947‑M2/1‑27 (MQ=255)
                                                                                                                         ttAAATAATATTGGTGAGCTTTTGATataaaatataatactactagaagtataaacgaaaatcaagataataaaacgttaaaagatataacaaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgta                   >  2:714822‑M2/1‑26 (MQ=255)
                                                                                                                           aaaTAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaag                 <  1:199338‑M2/140‑117 (MQ=255)
                                                                                                                               aataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctat             >  1:41526‑M2/1‑20 (MQ=255)
                                                                                                                                     gggggTCTTTTTATatgcaatataatactactagaagtataaccgaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagata       <  1:719497‑M2/140‑127 (MQ=255)
                                                                                                                                     gggggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagat       <  2:301446‑M2/140‑127 (MQ=255)
                                                                                                                                       gggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagatat     <  1:46754‑M2/140‑129 (MQ=255)
                                                                                                                                       gggTCTTTTTAAatgcaatataatactactagaaggataaccgaaaatcaagataataaaacgttaaaagataagacgaaaagtgggaaacaacgaccatggagagaaaagaaaatagataatgtaagctatgcagatat     >  2:20862‑M2/1‑12 (MQ=255)
                                                                                                                                       gaatcttTTAATatgcaatataatactactagaagtataaccgaaaaacaagataataaaacgttaaaagataagacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagatat     >  2:329023‑M2/4‑12 (MQ=255)
                                                                                                                                         gTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagatatac   <  2:569727‑M2/140‑131 (MQ=255)
                                                                                                                                          tCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaacagcaaatagctaatgtaagctatgccgctatact  <  1:8486‑M2/140‑132 (MQ=255)
                                                                                                                                           |                                                                                                                                          
ATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2979‑3125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.