New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 3069309 (0.280)3 (0.000) 3/244 NT 2.0% intergenic (‑395/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 3118 0 (0.000)intergenic (‑444/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1160 total aligned reads displayed.

TTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2930‑3125
                                                                                                                                           |                                                                                                                                            
  tGAAACGAGTGTCAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAc                                                                                                                                            <  1:378003/140‑1 (MQ=255)
   gAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTCTATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGACACGAAAATTTGACAATAAAAAAcc                                                                                                                                           >  2:143458/1‑140 (MQ=255)
   gAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAcc                                                                                                                                           <  2:546022/140‑1 (MQ=255)
    aaaCGAGTGTGAACGAGTTTCTTGGTGTTTTGTTAGTATATAGAAATAACTAGATTGTATATATATAGCTGTAACTGTTGATATTACAGTGGTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAccc                                                                                                                                          <  2:571340/140‑1 (MQ=255)
      aCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTAATGTGTTTAAACGTGTTTGATTATGTAAAAGGAAAATTGAACAATAAAAAAACCCa                                                                                                                                        >  2:189496/1‑140 (MQ=255)
       cGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAg                                                                                                                                       <  1:694333/140‑1 (MQ=255)
         aGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGtt                                                                                                                                     >  1:644152/1‑140 (MQ=255)
           tgtgAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTtat                                                                                                                                   <  1:460939/140‑1 (MQ=255)
               aaCGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTAtatta                                                                                                                               >  2:478021/1‑140 (MQ=255)
               aaCGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGATTTTGTGCGTGGAAGGAAAATTTGACAATAAAAAACCCCAGTAatataa                                                                                                                               >  2:426089/1‑138 (MQ=255)
               aaCGAGTTTCTTCTTGTATTAATAATATATAGAAATAACTCGATTTTATATATATAGCTGTAAATGTTAATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTAtatta                                                                                                                               <  2:204443/140‑1 (MQ=255)
                  gAGTTTCTTGTGGTCTTGATACTATAGAGAGATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATAttatta                                                                                                                            <  2:49196/140‑1 (MQ=255)
                    gTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAg                                                                                                                          >  2:629865/1‑140 (MQ=255)
                       tcttctTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTTTTAAgctt                                                                                                                       <  2:347416/140‑4 (MQ=255)
                       tcttctTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGgtg                                                                                                                       >  1:106743/1‑140 (MQ=255)
                       tcttctTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGgtg                                                                                                                       >  2:169807/1‑140 (MQ=255)
                       tcttctTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGgtg                                                                                                                       >  2:680118/1‑140 (MQ=255)
                        cttcttGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGgtgt                                                                                                                      >  2:223902/1‑140 (MQ=255)
                        cttcttGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGgtgt                                                                                                                      <  1:470825/140‑1 (MQ=255)
                          tcttgtcttgATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCg                                                                                                                    <  1:329448/140‑1 (MQ=255)
                            ttgtcttgATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTAGaa                                                                                                                  >  2:584484/1‑140 (MQ=255)
                             tgtcttgATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAAt                                                                                                                 >  1:83267/1‑140 (MQ=255)
                                  tgATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGACAATCTGACATACATAAACTTCAGTTATAGTATTAAGGTGTTGAATCTTaa                                                                                                            >  2:736807/1‑140 (MQ=255)
                                   gATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTaaa                                                                                                           <  2:275509/140‑1 (MQ=255)
                                     tACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAaata                                                                                                         <  1:207668/140‑1 (MQ=255)
                                      aCTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAaataa                                                                                                        >  1:731172/1‑140 (MQ=255)
                                      aCTAGATAGAAGTAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAaataa                                                                                                        <  1:180700/140‑1 (MQ=255)
                                        tatataGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAataata                                                                                                      >  2:638973/1‑140 (MQ=255)
                                        tatataGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAataata                                                                                                      >  2:750278/1‑140 (MQ=255)
                                            tataaaTAACTCGCTTTTATATATATAGGTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTgg                                                                                                  <  2:417937/137‑1 (MQ=255)
                                             aGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTggg                                                                                                 >  2:650542/1‑140 (MQ=255)
                                                aaTAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGt                                                                                             <  2:232910/140‑1 (MQ=255)
                                                    aCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttt                                                                                         >  2:314265‑M2/1‑137 (MQ=255)
                                                    aCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttt                                                                                         <  1:268273‑M2/140‑4 (MQ=255)
                                                     cTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt                                                                                        >  1:439900‑M2/1‑136 (MQ=255)
                                                     cTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt                                                                                        <  1:583769‑M2/140‑5 (MQ=255)
                                                     cTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt                                                                                        <  2:467748‑M2/140‑5 (MQ=255)
                                                     cTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGGCtttt                                                                                        <  1:428510‑M2/140‑5 (MQ=255)
                                                     cTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCCAATCTTAAATAATACTGGGGGTCtttt                                                                                        >  1:493765‑M2/1‑136 (MQ=255)
                                                     cTCGACTTTATGTATGTATCTCTAACTGTCGATATGACAGTGTATAAACGTGATTTTGTGAGTTAAAGGAAAATTTAAAAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt                                                                                        >  2:333493‑M2/1‑136 (MQ=255)
                                                      tCGATTTTATATATATAGCTGTAACTGTTGATATTACGGTGTTTAAACGTGTTTTTGTGCGTGAAAGTAAAATTTGTCAATAAAAAACCCGAGTTATATTATTAAGTTGTCGAATCTGAAATCATCTGTGGGATCttttt                                                                                       <  2:116339‑M2/140‑6 (MQ=255)
                                                       cGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGACAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttta                                                                                      <  1:679809‑M2/140‑7 (MQ=255)
                                                       cGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACGGGGAGTCttttta                                                                                      <  2:844‑M2/140‑7 (MQ=255)
                                                        gATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttttat                                                                                     <  1:601290‑M2/140‑8 (MQ=255)
                                                            ttAGATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTTCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgc                                                                                 >  1:633699‑M2/1‑136 (MQ=255)
                                                               tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaat                                                                              <  2:726445‑M2/140‑8 (MQ=255)
                                                               tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaat                                                                              <  1:97702‑M2/140‑8 (MQ=255)
                                                               tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATAATAGGGGACGTGTTATaggcaat                                                                              <  1:319182‑M2/140‑8 (MQ=255)
                                                               tatatataGCTGTAACTGGTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaat                                                                              >  1:661560‑M2/1‑133 (MQ=255)
                                                                atatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaata                                                                             >  2:438576‑M2/1‑132 (MQ=255)
                                                                atatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaata                                                                             >  2:246701‑M2/1‑132 (MQ=255)
                                                                  atataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatata                                                                           <  1:135017‑M2/140‑11 (MQ=255)
                                                                   tataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataa                                                                          >  1:259148‑M2/1‑129 (MQ=255)
                                                                     taGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataata                                                                        >  2:153842‑M2/1‑127 (MQ=255)
                                                                      aGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatac                                                                       >  1:534855‑M2/1‑126 (MQ=255)
                                                                      aGCTGTAACTGTTGATAATACAGTATTTAAACATGTTTTTGTGCGTGAAAGGAAAATTGTACAATAAAAAACCCCAGTTATATTATTAATGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatac                                                                       >  2:127851‑M2/1‑126 (MQ=255)
                                                                         tGTAACTTATGCTATTAACGGTTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactac                                                                    >  2:758843‑M2/1‑123 (MQ=255)
                                                                         tGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactac                                                                    <  1:705973‑M2/140‑18 (MQ=255)
                                                                         ggtAACTGTTGATAGTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactac                                                                    >  1:570793‑M2/2‑123 (MQ=255)
                                                                           tAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaacataatactacta                                                                  <  2:405838‑M2/140‑20 (MQ=255)
                                                                             aCTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactaga                                                                <  2:106550‑M2/140‑22 (MQ=255)
                                                                             aCTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactaga                                                                <  2:382314‑M2/140‑22 (MQ=255)
                                                                               tGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAGCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACGGGGGGTCTTTTTATatgaaatataatactactagaag                                                              <  1:124888‑M2/140‑24 (MQ=255)
                                                                               ggtGGATAGTACTGTGGTTGAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGGGTCGAATCTTAAAGAATACTGGGGGTCTTTTTATatgcaatataatactactagaag                                                              >  1:247558‑M2/2‑117 (MQ=255)
                                                                                gTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagt                                                             <  1:409620‑M2/140‑25 (MQ=255)
                                                                                gTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGACTTTTTATattcaatataatacgactagaagt                                                             <  1:514239‑M2/140‑25 (MQ=255)
                                                                                   gATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTCTATCATGCGGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtata                                                          <  1:757538‑M2/140‑28 (MQ=255)
                                                                                   gATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTTGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtata                                                          <  2:122534‑M2/140‑28 (MQ=255)
                                                                                    atatTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATacgcaatataatactactagaagtataa                                                         <  1:193947‑M2/140‑29 (MQ=255)
                                                                                     tatTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataac                                                        >  1:100366‑M2/1‑111 (MQ=255)
                                                                                        tACAGTGTTTAAACTTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccga                                                     >  2:519502‑M2/1‑108 (MQ=255)
                                                                                                ttAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcagg                                             <  2:600237‑M2/140‑41 (MQ=255)
                                                                                                ttAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCACAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaaggatagacgaaaataaag                                             <  2:703576‑M2/140‑41 (MQ=255)
                                                                                                   gacGTGTGTGTGTAGGTGAAAGGAAAGTTTGACAATATAAAACCCCAGTTATATTATTAAGGTGTCGATTCTTAAATAATACTGGGGGTCGTTTTATatgcaatataatactactagaagtataaccgaaaatcaagata                                          >  2:459912‑M2/2‑97 (MQ=255)
                                                                                                   aaCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatacgactagaagtataaccgaaaatcaagata                                          >  1:296781‑M2/1‑97 (MQ=255)
                                                                                                      gtgtTTTTGTGCGGGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactaccagtctaaccgacgatccagataata                                       <  1:156033‑M2/140‑47 (MQ=255)
                                                                                                        gtTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaa                                     >  1:423349‑M2/1‑92 (MQ=255)
                                                                                                           tttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacg                                  <  1:364755‑M2/140‑52 (MQ=255)
                                                                                                            ttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgt                                 <  1:200091‑M2/140‑53 (MQ=255)
                                                                                                             tgtgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTTTCGAATCTTAAATAATACTTGGGGTCTTTTTATatgcaatataatactaatagatgtataaccgaaaataaagataataacacatt                                <  2:669941‑M2/140‑54 (MQ=255)
                                                                                                                gCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaa                             >  2:299873‑M2/1‑84 (MQ=255)
                                                                                                                        ggAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatga                     <  1:593439‑M2/140‑65 (MQ=255)
                                                                                                                        ggAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTAGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgtgaaaggatatga                     <  1:349981‑M2/140‑65 (MQ=255)
                                                                                                                          aaaaTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTGTATatgcaatataatactacaagaagtataaccgaaaatcaagataagaaaacgttaaaagatatgacg                   >  1:744827‑M2/1‑74 (MQ=255)
                                                                                                                            aaTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaa                 <  1:145994‑M2/140‑69 (MQ=255)
                                                                                                                             aTTTGACAATAAAAAGCCCAAGTTATTTTATTAAGTTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaa                >  2:265418‑M2/1‑71 (MQ=255)
                                                                                                                             aTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaa                >  1:715194‑M2/1‑71 (MQ=255)
                                                                                                                               ttGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaac              <  2:371841‑M2/140‑72 (MQ=255)
                                                                                                                                   cAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcactatagaactactagaagtataaccgaaaatccagatcataaaaccttcaaagatatgacgaaaagtggg          <  2:660427‑M2/140‑76 (MQ=255)
                                                                                                                                   cAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtggg          <  1:288348‑M2/140‑76 (MQ=255)
                                                                                                                                      tAAAAAgacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcg        <  1:399505‑M1/140‑135 (MQ=255)
                                                                                                                                       aaaaagacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcga       <  2:392261‑M1/140‑136 (MQ=255)
                                                                                                                                        aaaagacccccagtattatttaatattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcgag      <  1:224372‑M1/140‑137 (MQ=255)
                                                                                                                                        aaaagacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcacattttcctttcaagcacaaacacacgcttaaacaccgtaatctcaacagttacagctatatatataaaatcgag      <  1:165441‑M1/140‑137 (MQ=255)
                                                                                                                                         aaatacctccattattatttaagattcgacaccttaataatttaactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcgagt     <  2:35754‑M1/140‑138 (MQ=255)
                                                                                                                                          aagacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcattcacaaaaacacgtttaaacactgtaatatcaacagttactgctatatatataaaatccagtt    >  2:560257‑M1/1‑2 (MQ=255)
                                                                                                                                          aagacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcgagtt    <  2:689501‑M1/140‑139 (MQ=255)
                                                                                                                                           agacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtctaattttcctttcatgcataaaaacacgcttaaacactgtactatcaactgttacagctatatatataaaatcgatcaa   >  2:612568‑M1/1‑1 (MQ=255)
                                                                                                                                           agacccccaggatgatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcgagtta   <  2:2869‑M1/140‑140 (MQ=255)
                                                                                                                                           aaCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagcataacataaaagaaagataataaaacggtaaaagataggacgaaaagtgggagacaagg  <  1:554787‑M2/140‑84 (MQ=255)
                                                                                                                                           |                                                                                                                                            
TTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2930‑3125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.