BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	1036 =	1509 (0.980)	3 (0.000)	3/214	NT	0.27%	coding (159/192 nt)	USA300HOU_RS15665	hypothetical protein
*	?	NC_012417	1126 =	935 (0.740)	3 (0.000)	3/214	NT	0.27%	coding (69/192 nt)	USA300HOU_RS15665	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 505 total aligned reads displayed.

AAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012417/1196‑1036

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcacaaaaataagacagtacAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTT  >  NC_012417/1126‑1264

AAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTT                                                                                                                                                                  >  1:604083/1‑140

 AATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTG                                                                                                                                                                 >  1:653185/1‑140

 AATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTG                                                                                                                                                                 <  1:401767/140‑1

 AATGATAGGTCTGGCAAAGACAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTTTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTG                                                                                                                                                                 <  2:285658/140‑1

  ATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGT                                                                                                                                                                <  1:646411/140‑1

  ATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGT                                                                                                                                                                >  1:467741/1‑140

   TGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACCTACAGCATTTGTC                                                                                                                                                               >  2:395622/1‑140

    gatctGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGGGTTTGTCTTATTTTTTTGACACTACATACAACATTTGTCA                                                                                                                                                              >  2:15359/6‑140

    GATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGTTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCA                                                                                                                                                              <  2:387475/140‑1

    GATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCA                                                                                                                                                              <  2:540504/140‑1

    GATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCA                                                                                                                                                              >  1:136041/1‑140

    GATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCA                                                                                                                                                              <  1:586024/140‑1

    GATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCA                                                                                                                                                              >  1:281261/1‑140

    GATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACAATACATACAGCATTTGTga                                                                                                                                                              >  1:395536/1‑138

     ATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTGTTGTGACACGATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATGTGGCAC                                                                                                                                                             >  1:6233/1‑140

      tgGGTCTGGCAAAGCGAGAAATTGCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACA                                                                                                                                                            <  2:699786/138‑1

      TAGGTGTGGTAAAGCCAGAAATGCCAGCGGTTTTAGGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACA                                                                                                                                                            <  2:673437/140‑1

      TAGGTCTGGCAAAGCCGGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACA                                                                                                                                                            <  1:368315/140‑1

      TAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACA                                                                                                                                                            <  1:639275/140‑1

      TAGGTCTGGCAAAGCCACAACTTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACA                                                                                                                                                            <  1:294561/140‑1

       AGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCGTACAAAGGTGTACTGTCTTATTTTTGTGACTCAGTATAGTGCGTTTGTCTTATTTTTGTGACACTCGCTCCAGCACTTTTCACAt                                                                                                                                                           >  2:315151/1‑139

       AGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAA                                                                                                                                                           <  2:378739/140‑1

       AGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAA                                                                                                                                                           >  1:389677/1‑140

       AGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAA                                                                                                                                                           >  2:600760/1‑140

        GGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAA                                                                                                                                                          <  1:308132/140‑1

        GGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAA                                                                                                                                                          >  1:690402/1‑140

        GGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAA                                                                                                                                                          <  1:253890/140‑1

        GGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTAGTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACGACATACAGCATTTGTCACAAA                                                                                                                                                          <  1:285352/140‑1

          TCTGGCAACGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAA                                                                                                                                                        <  1:425992/140‑1

          TCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAA                                                                                                                                                        >  1:216272/1‑140

               CAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGA                                                                                                                                                   >  1:518934/1‑140

               CAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGA                                                                                                                                                   >  1:592668/1‑140

                AAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACACAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGCCACTACATAACGCATTTGTTACAAAACTAAGAC                                                                                                                                                  >  2:263882/1‑140

                AAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGAC                                                                                                                                                  <  1:271875/140‑1

                AAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGAC                                                                                                                                                  <  1:629936/140‑1

                 AAGCCAGAAATTGCAGTGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACA                                                                                                                                                 <  2:627889/140‑1

                 AAGCCAGAAATTCCTGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGCCTTATTTTTGTGACACTACATACAGCATTTGTCTCAAAAATAAGACA                                                                                                                                                 >  1:488713/1‑140

                 AAGCCAGAAAGTCCAGGTGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACA                                                                                                                                                 <  2:74678/140‑1

                  gGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAG                                                                                                                                                <  1:434247/139‑1

                  AGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAG                                                                                                                                                >  1:24035/1‑140

                  AGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAG                                                                                                                                                >  1:192905/1‑140

                  AGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATAAAGCATTTGTAACAAAAATAAGACAG                                                                                                                                                >  2:53163/1‑140

                   GCCAGAAATTCCAGGGGTTTTAAGGTATTTTACAGTGATATCATACAAAGCTGTACTGTCTTCTTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGTCACTACATACAGCCTTTGTCACAAAAATAAGACAGT                                                                                                                                               >  2:283004/1‑140

                    tCAGAAACTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTA                                                                                                                                              <  2:639866/139‑1

                    CCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTA                                                                                                                                              <  2:434056/140‑1

                    CCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTA                                                                                                                                              <  1:540080/140‑1

                     CAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGTTCACATACAAAGCTGTGCTTTCTTAGTTTTGTGACACATTATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTAC                                                                                                                                             <  2:175149/140‑1

                                                    tGTGATAGCTGACAAAGCTTTACTGTCTTATTTTTGTAACACAATATATTGCGTTGGTCTTAATTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTT                                                                                                              <  2:325732/139‑1

                                                                                                                                      tatTTTGTAACAATAATAAGTCAGTACATCGTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTT                            <  2:29519/137‑1

                                                                                                                                          gcaTCACAAAAAGGAGACAGAACAGCTTTGTATGATATCACTTGACAATACCTTAAATCCCCTGGAAGTTCTGGCCTTGCCCGACCTATCATTTTTGAATGATAGCAAATTCTCTTTCTGCTCTTACGGAGTTTTTAGAG                        <  2:3515/137‑1

                                                                                                                                            GTCACAAAAATAAGACATTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAA                      >  2:86809/1‑140

                                                                                                                                            GTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAATCCCCTGGACTTTTTGGCTTTGCCAGACCTATCATTTTTGAATGATAGAAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAA                      <  2:499679/140‑1

                                                                                                                                              CACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAA                    >  1:409165/1‑140

                                                                                                                                              CACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAA                    >  2:519928/1‑140

                                                                                                                                               ACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAA                   >  1:147853/1‑140

                                                                                                                                               ACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGATCTTATTGAGTTTTTAGAGAAAAA                   >  2:335638/1‑140

                                                                                                                                                CAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAGAACTAGAAGTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAAT                  >  1:444848/1‑140

                                                                                                                                                CAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAAT                  >  2:363556/1‑140

                                                                                                                                                  AAAATAAGACAGTACAGCTTTGTGTGATATCACTTTAAAATACCTTATAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGGTTTTAGAGAAAAATTg                >  1:97708/1‑139

                                                                                                                                                  AAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAGTTA                <  2:444627/140‑1

                                                                                                                                                   AAATGAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACTCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAA               <  2:663730/140‑1

                                                                                                                                                   AAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGCGTTTTTAGAGAAAAATTAA               >  2:507836/1‑140

                                                                                                                                                   AAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTATCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAA               >  2:222475/1‑140

                                                                                                                                                    AATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCCTTTTTGAAGGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAA              >  1:326959/1‑140

                                                                                                                                                    AATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAA              >  1:613541/1‑140

                                                                                                                                                     ATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAA             >  1:454144/1‑140

                                                                                                                                                      TAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTTATTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAA            >  1:661855/1‑140

                                                                                                                                                      TAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGCAAAATTAAAAA            >  1:101964/1‑140

                                                                                                                                                      TAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTCAAAACCCCAGAAATTTCAGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCCCTTACGGAGTTTTTAGAGAAAAATTAAAAA            <  1:181601/140‑1

                                                                                                                                                       AAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGTAGTTTTTAGAGAAAAATTAAAAAT           >  2:144209/1‑140

                                                                                                                                                        AGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCGAGATCTATAATTTTTCATGGACATTAAATTCTCCTTATGCTCTTACGGAGTTTTTGGAGGAACATTAAAGATT          >  1:363183/1‑140

                                                                                                                                                        AGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTGTGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATT          >  1:479821/1‑140

                                                                                                                                                        AGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGCAAGATCAAAAAgg          >  2:416446/1‑138

                                                                                                                                                        AGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAACATT          >  1:175834/1‑140

                                                                                                                                                        AGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATT          >  1:154591/1‑140

                                                                                                                                                        AGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATT          >  1:57041/1‑140

                                                                                                                                                        AGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATT          >  1:341749/1‑140

                                                                                                                                                        AGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATT          >  2:126318/1‑140

                                                                                                                                                        AGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATT          >  2:113928/1‑140

                                                                                                                                                        AGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATT          >  1:557606/1‑140

                                                                                                                                                         GACAGTACAGCTTTGTATGATGTCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTC         <  1:67726/140‑1

                                                                                                                                                         GACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAGAACCCCTGGAATTCCTGGCTTGGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTC         <  2:247123/140‑1

                                                                                                                                                         GACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTC         >  2:276427/1‑140

                                                                                                                                                         GACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTC         <  2:650655/140‑1

                                                                                                                                                         GACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTATGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTAGGGAGGATTTAGAATAGAATTAAAAACTC         >  2:201127/1‑140

                                                                                                                                                          ACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACTGAGTTTTTTTAGAAAACTTAAAAATTCc        >  2:475119/1‑139

                                                                                                                                                          ACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAGTTAAAACTTCT        >  1:120901/1‑140

                                                                                                                                                          ACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCT        >  1:74665/1‑140

                                                                                                                                                          ACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCT        >  1:521457/1‑140

                                                                                                                                                          ACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGATTATAGAGAAAAATTAAAAATTCg        >  2:1056/1‑139

                                                                                                                                                          ACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGAACTATCATTTTGGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGCAAAATTAAAAATTCT        >  2:424226/1‑140

                                                                                                                                                          ACAGTACAGCTTTGTATGATATCACTTTAAAACACCTGAATAACCCGTTAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCT        <  2:567452/140‑1

                                                                                                                                                           CAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAATCTCCTGGAATTTTTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTC       <  2:40619/140‑1

                                                                                                                                                           CAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTC       >  2:558032/1‑140

                                                                                                                                                           CAGTACAGCTGTGTATGATATCACTTTAAAATACCTTATAGCCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTGCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTC       <  2:453598/140‑1

                                                                                                                                                            AGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCG      <  1:506028/140‑1

                                                                                                                                                             GTACAGCTTTGTATTATATCACTTTAAAATACCTTTCAACCCCTGGAATTTCGGGTTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGA     <  2:461452/140‑1

                                                                                                                                                               ACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATT   >  1:88168/1‑140

                                                                                                                                                               ACACCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATT   <  2:587965/140‑1

                                                                                                                                                                CAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAGACTTCTCGATTT  >  2:234811/1‑140

AAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012417/1196‑1036

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcacaaaaataagacagtacAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTT  >  NC_012417/1126‑1264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.