| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2529497 = | 76 (1.350) | 3 (0.060) | 3/234 | NT | 4.1% | coding (441/1551 nt) | zinT | Metal‑binding protein ZinT |
| ? | USA300TCH1516_ALE | = 2529493 | 70 (1.370) | coding (445/1551 nt) | zinT | Metal‑binding protein ZinT | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAAGTTGCATCTACTATCAAAGATAAAGATAAAAAACTGTCTTTAGAGGATAAATTAGATAAAGCAAAGCTTTTAACTGATCAACACGAGCATGGTGAAGAGCATGAACATGAGGGACATGATCATGAGAAAGAAGAACATCATCATCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2529646‑2529497‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcatcatcatGGTGGATATGATCCACACGTATGGTTAGATCCTAAAATTAACCAAACTTTCGCTAAAGAAATTAAAGATGAATTAGTGAAAAAAGATCCAAAACATAAAGATGACTATGAGAAAAACTACAAAAAATTAAAC < USA300TCH1516_ALE/2529493‑2529362 AAAGTTGCATCTACTATCAAAGATAAAGATAAAAAACTGTCTTTAGAGGATAAATTAGATAAAGCAAAGCTTTTAACTGATCAACACGAGCATGGTGAAGAGCATGAACATGAGGGACATGATCATGAGAAAGAAGAACA < 1:344548/140‑1AAAGTTGCATCTACTATCAAAGATAAAGATAAAAAACTGTCTTTAGAGGATAAATTAGATAAAGCAAAGCTTTTAACTGATCAACACGAGCATGGTGAAGAGCATGAACATGAGGGACATGATCATGAGAAAGAAGAACA < 1:547930/140‑1 AGTTGCATCTACTATCAAAGATAAAGATAAAAAAATGTCTTTAGAGGATAAATTAGATAAAGCAAAGCTATTAACTGATCAACACGAGCATGGTGAAGAGCATGAACATGAGGGACATGATCATGAGAAAGAAGAACATC > 2:558387/1‑140 AGTTGCATCTACTATAAAAGATAAAGATAAAAAACTGTCTTTAGAGGATAAATTAGATAAAGCAAAGCTTTTAACTGATCAACACGAGCATGGTGAAGAGCATGAACATGAGGGACATGATCATGAGAAAGAAGAACATC < 2:634359/140‑1 AGTTGCATCTACTAGTAAAGGTAAAGATAAAAAACTGTCTTGAGAGGATAAATTAGATAAAGCAAAGCTTTTAACTGATCAACACGAGCATGGTGAAGAGCATGAACATGAGGGACATGATCATGAGAAAGAAGAACATC < 2:637622/140‑1 TGCATCTACTATCAAAGATAAAGATAAAAAACTGTCTTTAGAGGATAAATTAGATAAAGCAAAGCTTTTAACTGATCAACACGAGCATGGTGAAGAGCATGAACATGAGGGACATGATCATGAGAAAGAAGAACATCATC > 2:17301/1‑140 GCATCTACTATCAAAGATAAAGATAAAAAACTGTCTTTAGAGGATAAATTAGATAAAGCAAAGCTTTTAACTGATCAACACGAGCATGGTGAAGAGCATGAACATGAGGGACATGATCATGAGAAAGAAGAACATCATCA > 2:432542/1‑140 GCATCTACTATCAAAGATAAAGATAAAAAACTGTCTTTAGAGGATAAATTAGATAAAGCAAAGCTTTTAACTGATCAACACGAGCAGGGTGAAGAGCATGAACACGAGGGCCATGATCATGAGAAAGAAGACCATCATCA > 2:377890/1‑140 ATCTACTATCAAAGATAAAGATAAAAAACTGTCTTTAGAGGATAAATTAGATAAAGCAAAGCTTTTAACTGATCAACACGAGCATGGAGAAGAGCATGAACATGAGGGACATGATCATGAGAAAGAAGAACATCATCATC > 2:190519/1‑140 TCTACTATCAAAGATAAAGATAAAAAACTGTCTTTAGAGGATAAATTAGATAAAGCAAAGCTTTTAACTGATCAACACGAGCATGGTGAAGAGCATGAACATGAGGGACATGATCATGAGAAAGAAGAACATCATCATCA > 1:221378/1‑140 TCTACTATCAAAGATAAAGATAAAAAACTGTCTTTAGAGGATAAATTAGATAAAGCAAAGCTTTTAACTGATCAACACGAGCATGGTGAAGAGCATGAACATGAGGGACATGATCATGAGAAAGAAGAACATCATCATCA < 1:540608/140‑1 CTACTATCAAAGATAAAGATAAAAAACTGTCTTTAGAGGATAAATTAAATAAAGCAAAGCTTTTAACTGATCAACACGAGCATGGTGAAGAGCATGAACATGAGGGACATGATCATGAGAAAGAAGAACATCATCATCAT < 2:694855/140‑1 AAAGATAAAGATAAAAAACTGTCTTTAGAGGATAAATTAGATAAAGCAAAGCTTTTAACTGATCAACACGAGCATGGTGAAGAGCATGAACATGAGGGACATGATCATGAGAAAGAAGAACATCATCATCATGGTGGATA > 1:169449/1‑140 gaGACATGATCATGAGAAAGAAGAACATCATCATCATGGTGGATATGATCCACACGTATGGTTAGATCCTAAAATTAACCAAACTTTCGCTAAAGAAATTAAAGATGAATTAGTGAAAAAAGATCCAAAACATAAAGATG < 2:93687/138‑1 CATGATCATGAGAAAGAAGAACATCATCATCATGGTGGATATGATCCACACGTATGGTTAGATCCTAAAATTAACCAAACTTTCGCTAAAGAAATTAAAGATGAATTAGTGAAAAAAGATCCAAAACATAAAGATGACTA < 2:169449/140‑1 ATCATCATCATGGTGGATATGATCCACACGTATGGTTAGATCCTAAAATTAACCAAACTTTCGCTAAAGAAATTAAAGATGAATTAGTGAAAAAAGATCCAAAACATAAAGATGACTATGAGAAAAACTACAAAAAATTA > 1:135294/1‑140 cagaatgATGGTGGATATGAGCCACACGTATGGTTAGATCCTAAAATTAACCAAACTTACGCTAAAGAAATTAAAGATGAAGTAGTGAAAAAAGATCCAAAACATAAAGATGACTATGAGAAAAACTACAAAAAATTAAA < 2:276131/133‑1 CATCATAATGGCGGATATGATCCACACGTATGGGTAGATCCTAAAATTAACCAAACTTTCACTAAAGAAATTAAAGATGAATTAGTGAAAAAAGATCCAAAACATAAAGATGACTATGAGAAAAACTACAAAAAATTAAA < 2:378851/140‑1 atgatgATGGTGGATATGAGGCACACGTATGGTTAGATCCTAAAATTAACCAAACTTGCGCTAAAGAAATTAAAGATGAATTAGTGAAAAAAGATCCAAAACATAAAGATGACTATGAGAAAAACTACAAAAAATTAAAC < 2:190246/134‑1 AAAGTTGCATCTACTATCAAAGATAAAGATAAAAAACTGTCTTTAGAGGATAAATTAGATAAAGCAAAGCTTTTAACTGATCAACACGAGCATGGTGAAGAGCATGAACATGAGGGACATGATCATGAGAAAGAAGAACATCATCATCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2529646‑2529497‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcatcatcatGGTGGATATGATCCACACGTATGGTTAGATCCTAAAATTAACCAAACTTTCGCTAAAGAAATTAAAGATGAATTAGTGAAAAAAGATCCAAAACATAAAGATGACTATGAGAAAAACTACAAAAAATTAAAC < USA300TCH1516_ALE/2529493‑2529362 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |