New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2529497 =	76 (1.350)	3 (0.060)	3/234	NT	4.1%	coding (441/1551 nt)	zinT	Metal‑binding protein ZinT
	?	USA300TCH1516_ALE	= 2529493	70 (1.370)					coding (445/1551 nt)	zinT	Metal‑binding protein ZinT
Rejected: Frequency below/above cutoff threshold.

GTTTAATTTTTTGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTTTTATCTTTATCTTTGATA  >  USA300TCH1516_ALE/2529362‑2529632                                                                                                                                    |                                                                                                                                            gtTTAATTTTTTGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGCAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGCCTCATATCCACCatcatcat                                                                                                                                     <  2:190246‑M2/140‑9 (MQ=255)  tttAATTTTTTGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTACTTCATCTTTAATTTCTTTAGCGTAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGCTCATATCCACCatcattctg                                                                                                                                    <  2:276131‑M2/140‑10 (MQ=255)  tttAATTTTTTGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGTGAAAGTTTGGTTAATTTTAGGATCTACCCATACGTGTGGATCATATCCGCCattatgatg                                                                                                                                    <  2:378851‑M2/140‑10 (MQ=255)    tAATTTTTTGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCatgatgatgat                                                                                                                                  >  1:135294‑M2/1‑129 (MQ=255)      aTTTTTTGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGTTCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCatgatgatgatga                                                                                                                                >  2:442884/1‑140 (MQ=255)         ttttGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGt                                                                                                                             >  1:636143/1‑140 (MQ=255)         ttttGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGt                                                                                                                             <  1:215493/140‑1 (MQ=255)         ttttGTAGTTTTTCTCATAGTCATCTTTATGTTGGTGATCCTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTCGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGt                                                                                                                             <  1:440862/140‑1 (MQ=255)           ttGTCGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCGCTAATTCGTCTTTCGTTTCTGTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGttc                                                                                                                           <  2:12578/140‑1 (MQ=255)           ttGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGttc                                                                                                                           <  2:386775/140‑1 (MQ=255)            tGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGTATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGttct                                                                                                                          <  1:320914/140‑1 (MQ=255)              tAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGttcttc                                                                                                                        >  1:374944/1‑140 (MQ=255)                   tttCTCATCGGCAGCGTTATGTTTTTGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGGAGGTTTGGTTAAGTTTAGGATCTAATCATACGTGTGGATCATATCCACTATGATGATGATGATGTTCttctttct                                                                                                                   <  2:534762/140‑1 (MQ=255)                       tcATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATg                                                                                                               >  1:17301/1‑140 (MQ=255)                       tcATAGTCATCTTTATGTTTTGGATATTTTTTCACTAATTCATCTTTAATTTATTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACGATGATGGTGATGCTGTTCtgctttctgttg                                                                                                               >  1:321204/1‑136 (MQ=255)                         aTAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATGTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCCCCATGATGATGCTGATGTTCTTCTTTTTCTTgtt                                                                                                             >  1:593297/1‑138 (MQ=255)                         aTAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGGTCATATCCATCGTGATGGTGGTTATGTTCttctttcttttcat                                                                                                             >  1:559574/1‑134 (MQ=255)                         aTAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGAt                                                                                                             <  2:265234/140‑1 (MQ=255)                         aTAGTCATCTTTATGTTTCGGGACTAAATTTGCTTTTTGTTCTTTGATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGGTCATATCCACCATGATGATGATGATGTTCTTCTTTCTCGTGAt                                                                                                             >  1:135330/1‑140 (MQ=255)                          tAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAATTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATTCACCATGATGATGATGATGTTCTTCTTTCTCTTAATc                                                                                                            >  2:638131/1‑140 (MQ=255)                          tAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCatgatgatgatgttcttctttctcatgatcatg                                                                                                            <  2:169449‑M2/140‑34 (MQ=255)                          tAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATc                                                                                                            >  2:196369/1‑140 (MQ=255)                          tAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATGTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGCTc                                                                                                            >  1:25546/1‑140 (MQ=255)                           aGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCa                                                                                                           >  2:637865/1‑140 (MQ=255)                              cATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCATCATGATGATGATGATGTTCTTCTTTCTCATGATCactt                                                                                                        >  1:672569/1‑137 (MQ=255)                              cATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCatgatgatgatgttcttctttctcatgatcatgtctc                                                                                                        <  2:93687‑M2/140‑38 (MQ=255)                              cATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGTTGTTCTTCTTTGTCATGATCATGt                                                                                                        >  1:525969/1‑140 (MQ=255)                                   ttATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTc                                                                                                   >  1:320841/1‑140 (MQ=255)                                    tATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGAGGATGATGTTCTTCTTTCGCATGATCATGTCCCTCa                                                                                                  >  1:91948/1‑140 (MQ=255)                                     aTGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCAt                                                                                                 >  1:432081/1‑140 (MQ=255)                                      tGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGT‑CCTCATGt                                                                                               >  1:389740/1‑140 (MQ=255)                                             gATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGc                                                                                         >  2:286298/1‑140 (MQ=255)                                              aTCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTTATGct                                                                                        >  1:173139/1‑140 (MQ=255)                                                 ttttttCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCtt                                                                                     >  1:150920/1‑140 (MQ=255)                                                   ttttCACTAATTCATCTTTAATTTCTTTCGCGAATGTTTGGTTAATTTTAGGATCTATCCATACGTGTGGATCATATCCACAATGATGATGCTGATGTTCTTCTTTCTCCTTCTCATGTACCTCCTGTTCGTCCTTTTcc                                                                                   >  2:48033/1‑139 (MQ=255)                                                     ttCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCAcc                                                                                 >  1:81008/1‑140 (MQ=255)                                                     ttCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCAcc                                                                                 >  1:424958/1‑140 (MQ=255)                                                      tCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCa                                                                                >  2:482280/1‑140 (MQ=255)                                                      tCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCa                                                                                >  2:221378/1‑140 (MQ=255)                                                       cACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCAt                                                                               >  1:516182/1‑140 (MQ=255)                                                        aCTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATg                                                                              >  1:273115/1‑140 (MQ=255)                                                        aCTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATg                                                                              >  1:344798/1‑140 (MQ=255)                                                                 tcggtagtttCTTTATCCAAGGTTTCGTGAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATTATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTg                                                                     <  2:608946/133‑1 (MQ=255)                                                                         ttCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTa                                                             <  1:671149/140‑1 (MQ=255)                                                                          tCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTaa                                                            <  2:415077/140‑1 (MQ=255)                                                                          tCTTTAGCGAAAGTTTGGTTAATGTTAGGATTTAACCATACGTGTGGATCCCGACAGGTTACAGTACTCTGTTGTGAATAGGTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTaa                                                            <  2:500734/140‑1 (MQ=255)                                                                            ttttgggAAAGGTTGGTTTATTTTCGGAGCCAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATTATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTaaaa                                                          <  2:3216/134‑1 (MQ=255)                                                                             ttAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAg                                                         <  2:592225/140‑1 (MQ=255)                                                                               aGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCCTGTTGATCAGCTACAAgct                                                       >  2:619933/1‑140 (MQ=255)                                                                                gCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAgctt                                                      >  1:113588/1‑140 (MQ=255)                                                                                    aaGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAgctttgct                                                  <  2:695013/140‑1 (MQ=255)                                                                                    aaGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAgctttgct                                                  >  1:432542/1‑140 (MQ=255)                                                                                     aGTTTGGTTAATTTTAGGATCTAACCACACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAgctttgctt                                                 >  1:456142/1‑140 (MQ=255)                                                                                         tGGTTAATTTTAGGCTCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCCTGTCCCTCATGTTCATGCTCTTCCCCTTGCTCGAGATGCTCAGTTAAAAGCTTTGCTTTATc                                             >  2:643271/1‑140 (MQ=255)                                                                                         tGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTCAAAGCTTTGCTTTATc                                             >  2:466260/1‑140 (MQ=255)                                                                                          ggTTAATTTTAGGATCTAACCATTCGTGTGGATCATATCCACAATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTCTTGATCAGTTAAAAGCTTTGCTTTATcc                                            >  2:370146/1‑139 (MQ=255)                                                                                          ggTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTTCTTTATCt                                            >  2:404975/1‑140 (MQ=255)                                                                                           gTTATTTTTAGGATCTAAGCATACGTTTGGTTCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATTTGCCTCATGTTCATGCTCTTCTCCATTCTTGTGTTGATCAGTTAAAAGCTTTGCTTTATCTa                                           <  2:182957/140‑1 (MQ=255)                                                                                           gTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTAATCTa                                           >  2:416456/1‑140 (MQ=255)                                                                                           gTTAACTTTTGAATCTAACCATACGTGTGTATCATATCCGCGATTATGATGATTATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCTTTCTCTTCACCATGCTCGTGTTGATCAGTTAAACGCTTTGCTTTATCTa                                           <  2:542434/140‑1 (MQ=255)                                                                                            ttAATTTTAGTATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTaa                                          <  2:520322/140‑1 (MQ=255)                                                                                            ttAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTaa                                          <  2:513064/140‑1 (MQ=255)                                                                                             tAATCTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAAt                                         <  1:378851/140‑1 (MQ=255)                                                                                              aaTTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCGTGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAAtt                                        <  2:356937/140‑1 (MQ=255)                                                                                                   taagATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATcc                                   <  1:281883/137‑1 (MQ=255)                                                                                                     ggATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCTTGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCctc                                 <  2:237011/140‑1 (MQ=255)                                                                                                     ggATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTCAAAGCTTTGCTTTATCTCATTTATCctc                                 >  1:309791/1‑140 (MQ=255)                                                                                                     ggATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGTTTTGCTTTATCTCATTTATCctc                                 >  1:682804/1‑140 (MQ=255)                                                                                                      gATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCctct                                <  1:442884/140‑1 (MQ=255)                                                                                                       atatAAGCATATGTTTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATTATGTACCTCATTTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTa                               <  2:704707/137‑1 (MQ=255)                                                                                                        tCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTTATCAGTTAAACGCTCTGCTTTATCTAATTTATCCTCTac                              >  1:368935/1‑139 (MQ=255)                                                                                                           aaCCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGa                           >  1:602349/1‑140 (MQ=255)                                                                                                           aaCCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCATCATATTGATGTTTTTGAGCAACCCCCAGTTGATCATTTAAAAGACATGCATTATCTAATTTATCCTCTAAAGa                           >  1:132193/1‑140 (MQ=255)                                                                                                             ccATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACa                         >  1:543538/1‑140 (MQ=255)                                                                                                                       ggATCATATCCACCATGATGATGATTATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTtttatc               <  2:371173/140‑1 (MQ=255)                                                                                                                       ggATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTtttatc               <  2:507452/140‑1 (MQ=255)                                                                                                                       ggATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCCTTATCTAATTTATCCTCTACATACAGTCAtttatc               >  2:475938/1‑140 (MQ=255)                                                                                                                           cATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAAACAGTTTtttatctttg           >  2:379939/1‑139 (MQ=255)                                                                                                                            atatCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTtttatctttat          <  2:374944/140‑1 (MQ=255)                                                                                                                             tatCCACCatgatgatgatgttcttctttctcatgatcatgtccctcatgttcatgctcttcaccatgctcgtgttgatcagttaaaagctttgctttatctaatttatcctctaaagacagttttttatctttatcttt         >  1:169449‑M2/1‑8 (MQ=255)                                                                                                                               tCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTTTtatctttatctt       <  2:150920/140‑1 (MQ=255)                                                                                                                                 caccaTGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTTTTATCTTTATCTTTg     >  1:574338/1‑140 (MQ=255)                                                                                                                                 caccaTGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTTTTATCTTTATCTTTg     <  2:344798/140‑1 (MQ=255)                                                                                                                                   ccaTGATGATGATGATGTTCTTCTTTCTCATGATCATGT‑CCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTCGCTTTATCTAATTTATCCTCTAAAGACAGTTTTTTATCTTTATCTTTGAta  <  2:389740/140‑1 (MQ=255)                                                                                                                                    |                                                                                                                                            GTTTAATTTTTTGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTTTTATCTTTATCTTTGATA  >  USA300TCH1516_ALE/2529362‑2529632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.