New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2529497 =	76 (1.350)	3 (0.060)	3/234	NT	4.1%	coding (441/1551 nt)	zinT	Metal‑binding protein ZinT
	?	USA300TCH1516_ALE	= 2529493	70 (1.370)					coding (445/1551 nt)	zinT	Metal‑binding protein ZinT
Rejected: Frequency below/above cutoff threshold.

TAATTTTTTGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTTTTATCTTTATCTTTGATAGTAG  >  USA300TCH1516_ALE/2529365‑2529636                                                                                                                                     |                                                                                                                                            gtttaattttttgtagtttttctcatagtcatctttatgttttggatcttttttcactaattcatctttaatttctttagcgcaagtttggttaattttaggatctaaccatacgtgtgcctcatatccaccatcatcat                                                                                                                                      <  2:190246‑M1/8‑7 (MQ=255)  tttaattttttgtagtttttctcatagtcatctttatgttttggatcttttttcactacttcatctttaatttctttagcgtaagtttggttaattttaggatctaaccatacgtgtggctcatatccaccatcattctg                                                                                                                                     <  2:276131‑M1/9‑8 (MQ=255)  tttaattttttgtagtttttctcatagtcatctttatgttttggatcttttttcactaattcatctttaatttctttagtgaaagtttggttaattttaggatctacccatacgtgtggatcatatccgccattatgatg                                                                                                                                     <  2:378851‑M1/9‑1 (MQ=255)   aTTTTTTGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGTTCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCatgatgatgatga                                                                                                                                    >  2:442884/1‑140 (MQ=255)    taattttttgtagtttttctcatagtcatctttatgttttggatcttttttcactaattcatctttaatttctttagcgaaagtttggttaattttaggatctaaccatacgtgtggatcatatccaccatgatgatgat                                                                                                                                   >  1:135294‑M1/130‑140 (MQ=255)      ttttGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGt                                                                                                                                 <  1:215493/140‑1 (MQ=255)      ttttGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGt                                                                                                                                 >  1:636143/1‑140 (MQ=255)      ttttGTAGTTTTTCTCATAGTCATCTTTATGTTGGTGATCCTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTCGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGt                                                                                                                                 <  1:440862/140‑1 (MQ=255)        ttGTCGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCGCTAATTCGTCTTTCGTTTCTGTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGttc                                                                                                                               <  2:12578/140‑1 (MQ=255)        ttGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGttc                                                                                                                               <  2:386775/140‑1 (MQ=255)         tGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGTATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGttct                                                                                                                              <  1:320914/140‑1 (MQ=255)           tAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGttcttc                                                                                                                            >  1:374944/1‑140 (MQ=255)                tttCTCATCGGCAGCGTTATGTTTTTGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGGAGGTTTGGTTAAGTTTAGGATCTAATCATACGTGTGGATCATATCCACTATGATGATGATGATGTTCttctttct                                                                                                                       <  2:534762/140‑1 (MQ=255)                    tcATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATg                                                                                                                   >  1:17301/1‑140 (MQ=255)                    tcATAGTCATCTTTATGTTTTGGATATTTTTTCACTAATTCATCTTTAATTTATTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACGATGATGGTGATGCTGTTCtgctttctgttg                                                                                                                   >  1:321204/1‑136 (MQ=255)                      aTAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATGTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCCCCATGATGATGCTGATGTTCTTCTTTTTCTTgtt                                                                                                                 >  1:593297/1‑138 (MQ=255)                      aTAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGGTCATATCCATCGTGATGGTGGTTATGTTCttctttcttttcat                                                                                                                 >  1:559574/1‑134 (MQ=255)                      aTAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGAt                                                                                                                 <  2:265234/140‑1 (MQ=255)                      aTAGTCATCTTTATGTTTCGGGACTAAATTTGCTTTTTGTTCTTTGATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGGTCATATCCACCATGATGATGATGATGTTCTTCTTTCTCGTGAt                                                                                                                 >  1:135330/1‑140 (MQ=255)                       tAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAATTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATTCACCATGATGATGATGATGTTCTTCTTTCTCTTAATc                                                                                                                >  2:638131/1‑140 (MQ=255)                       tAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATc                                                                                                                >  2:196369/1‑140 (MQ=255)                       tAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATGTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGCTc                                                                                                                >  1:25546/1‑140 (MQ=255)                        aGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCa                                                                                                               >  2:637865/1‑140 (MQ=255)                          tagtcatctttatgttttggatcttttttcactaattcatctttaatttctttagcgaaagtttggttaattttaggatctaaccatacgtgtggatcatatccaccATGATGATGATGTTCTTCTTTCTCATGATCATg                                                                                                             <  2:169449‑M1/33‑1 (MQ=255)                           cATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCATCATGATGATGATGATGTTCTTCTTTCTCATGATCactt                                                                                                            >  1:672569/1‑137 (MQ=255)                           cATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGTTGTTCTTCTTTGTCATGATCATGt                                                                                                            >  1:525969/1‑140 (MQ=255)                              catctttatgttttggatcttttttcactaattcatctttaatttctttagcgaaagtttggttaattttaggatctaaccatacgtgtggatcatatccaccATGATGATGATGTTCTTCTTTCTCATGATCATgtctc                                                                                                         <  2:93687‑M1/37‑3 (MQ=255)                                ttATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTc                                                                                                       >  1:320841/1‑140 (MQ=255)                                 tATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGAGGATGATGTTCTTCTTTCGCATGATCATGTCCCTCa                                                                                                      >  1:91948/1‑140 (MQ=255)                                  aTGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCAt                                                                                                     >  1:432081/1‑140 (MQ=255)                                   tGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGT‑CCTCATGt                                                                                                   >  1:389740/1‑140 (MQ=255)                                          gATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGc                                                                                             >  2:286298/1‑140 (MQ=255)                                           aTCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTTATGct                                                                                            >  1:173139/1‑140 (MQ=255)                                              ttttttCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCtt                                                                                         >  1:150920/1‑140 (MQ=255)                                                ttttCACTAATTCATCTTTAATTTCTTTCGCGAATGTTTGGTTAATTTTAGGATCTATCCATACGTGTGGATCATATCCACAATGATGATGCTGATGTTCTTCTTTCTCCTTCTCATGTACCTCCTGTTCGTCCTTTTcc                                                                                       >  2:48033/1‑139 (MQ=255)                                                  ttCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCAcc                                                                                     >  1:424958/1‑140 (MQ=255)                                                  ttCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCAcc                                                                                     >  1:81008/1‑140 (MQ=255)                                                   tCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCa                                                                                    >  2:221378/1‑140 (MQ=255)                                                   tCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCa                                                                                    >  2:482280/1‑140 (MQ=255)                                                    cACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCAt                                                                                   >  1:516182/1‑140 (MQ=255)                                                     aCTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATg                                                                                  >  1:344798/1‑140 (MQ=255)                                                     aCTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATg                                                                                  >  1:273115/1‑140 (MQ=255)                                                              tcggtagtttCTTTATCCAAGGTTTCGTGAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATTATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTg                                                                         <  2:608946/133‑1 (MQ=255)                                                                      ttCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTa                                                                 <  1:671149/140‑1 (MQ=255)                                                                       tCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTaa                                                                <  2:415077/140‑1 (MQ=255)                                                                       tCTTTAGCGAAAGTTTGGTTAATGTTAGGATTTAACCATACGTGTGGATCCCGACAGGTTACAGTACTCTGTTGTGAATAGGTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTaa                                                                <  2:500734/140‑1 (MQ=255)                                                                         ttttgggAAAGGTTGGTTTATTTTCGGAGCCAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATTATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTaaaa                                                              <  2:3216/134‑1 (MQ=255)                                                                          ttAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAg                                                             <  2:592225/140‑1 (MQ=255)                                                                            aGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCCTGTTGATCAGCTACAAgct                                                           >  2:619933/1‑140 (MQ=255)                                                                             gCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAgctt                                                          >  1:113588/1‑140 (MQ=255)                                                                                 aaGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAgctttgct                                                      >  1:432542/1‑140 (MQ=255)                                                                                 aaGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAgctttgct                                                      <  2:695013/140‑1 (MQ=255)                                                                                  aGTTTGGTTAATTTTAGGATCTAACCACACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAgctttgctt                                                     >  1:456142/1‑140 (MQ=255)                                                                                      tGGTTAATTTTAGGCTCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCCTGTCCCTCATGTTCATGCTCTTCCCCTTGCTCGAGATGCTCAGTTAAAAGCTTTGCTTTATc                                                 >  2:643271/1‑140 (MQ=255)                                                                                      tGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTCAAAGCTTTGCTTTATc                                                 >  2:466260/1‑140 (MQ=255)                                                                                       ggTTAATTTTAGGATCTAACCATTCGTGTGGATCATATCCACAATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTCTTGATCAGTTAAAAGCTTTGCTTTATcc                                                >  2:370146/1‑139 (MQ=255)                                                                                       ggTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTTCTTTATCt                                                >  2:404975/1‑140 (MQ=255)                                                                                        gTTATTTTTAGGATCTAAGCATACGTTTGGTTCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATTTGCCTCATGTTCATGCTCTTCTCCATTCTTGTGTTGATCAGTTAAAAGCTTTGCTTTATCTa                                               <  2:182957/140‑1 (MQ=255)                                                                                        gTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTAATCTa                                               >  2:416456/1‑140 (MQ=255)                                                                                        gTTAACTTTTGAATCTAACCATACGTGTGTATCATATCCGCGATTATGATGATTATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCTTTCTCTTCACCATGCTCGTGTTGATCAGTTAAACGCTTTGCTTTATCTa                                               <  2:542434/140‑1 (MQ=255)                                                                                         ttAATTTTAGTATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTaa                                              <  2:520322/140‑1 (MQ=255)                                                                                         ttAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTaa                                              <  2:513064/140‑1 (MQ=255)                                                                                          tAATCTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAAt                                             <  1:378851/140‑1 (MQ=255)                                                                                           aaTTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCGTGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAAtt                                            <  2:356937/140‑1 (MQ=255)                                                                                                taagATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATcc                                       <  1:281883/137‑1 (MQ=255)                                                                                                  ggATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCTTGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCctc                                     <  2:237011/140‑1 (MQ=255)                                                                                                  ggATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTCAAAGCTTTGCTTTATCTCATTTATCctc                                     >  1:309791/1‑140 (MQ=255)                                                                                                  ggATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGTTTTGCTTTATCTCATTTATCctc                                     >  1:682804/1‑140 (MQ=255)                                                                                                   gATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCctct                                    <  1:442884/140‑1 (MQ=255)                                                                                                    atatAAGCATATGTTTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATTATGTACCTCATTTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTa                                   <  2:704707/137‑1 (MQ=255)                                                                                                     tCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTTATCAGTTAAACGCTCTGCTTTATCTAATTTATCCTCTac                                  >  1:368935/1‑139 (MQ=255)                                                                                                        aaCCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGa                               >  1:602349/1‑140 (MQ=255)                                                                                                        aaCCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCATCATATTGATGTTTTTGAGCAACCCCCAGTTGATCATTTAAAAGACATGCATTATCTAATTTATCCTCTAAAGa                               >  1:132193/1‑140 (MQ=255)                                                                                                          ccATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACa                             >  1:543538/1‑140 (MQ=255)                                                                                                                    ggATCATATCCACCATGATGATGATTATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTtttatc                   <  2:371173/140‑1 (MQ=255)                                                                                                                    ggATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTtttatc                   <  2:507452/140‑1 (MQ=255)                                                                                                                    ggATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCCTTATCTAATTTATCCTCTACATACAGTCAtttatc                   >  2:475938/1‑140 (MQ=255)                                                                                                                        cATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAAACAGTTTtttatctttg               >  2:379939/1‑139 (MQ=255)                                                                                                                         atatCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTtttatctttat              <  2:374944/140‑1 (MQ=255)                                                                                                                            tCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTTTtatctttatctt           <  2:150920/140‑1 (MQ=255)                                                                                                                             tatccaccATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTTTTatctttatcttt          >  1:169449‑M1/9‑140 (MQ=255)                                                                                                                              caccaTGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTTTTATCTTTATCTTTg         >  1:574338/1‑140 (MQ=255)                                                                                                                              caccaTGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTTTTATCTTTATCTTTg         <  2:344798/140‑1 (MQ=255)                                                                                                                                ccaTGATGATGATGATGTTCTTCTTTCTCATGATCATGT‑CCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTCGCTTTATCTAATTTATCCTCTAAAGACAGTTTTTTATCTTTATCTTTGAta      <  2:389740/140‑1 (MQ=255)                                                                                                                                   tgatgatgatgatgTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTGGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTTTTATCTTTATCTTTGAtagt    >  2:567168/1‑140 (MQ=255)                                                                                                                                     ATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATTTAATTTATCCTCTAAAGACAGTTTTTTATCTTTATCTTTGAtagtag  <  2:694855‑M1/140‑1 (MQ=255)                                                                                                                                     |                                                                                                                                            TAATTTTTTGTAGTTTTTCTCATAGTCATCTTTATGTTTTGGATCTTTTTTCACTAATTCATCTTTAATTTCTTTAGCGAAAGTTTGGTTAATTTTAGGATCTAACCATACGTGTGGATCATATCCACCATGATGATGATGATGTTCTTCTTTCTCATGATCATGTCCCTCATGTTCATGCTCTTCACCATGCTCGTGTTGATCAGTTAAAAGCTTTGCTTTATCTAATTTATCCTCTAAAGACAGTTTTTTATCTTTATCTTTGATAGTAG  >  USA300TCH1516_ALE/2529365‑2529636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.