| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 499713 | 59 (1.080) | 5 (0.100) | 3/248 | NT | 8.0% | coding (2417/4500 nt) | gltA | Glutamate synthase [NADPH] large chain |
| ? | USA300TCH1516_ALE | = 499723 | 58 (1.100) | coding (2427/4500 nt) | gltA | Glutamate synthase [NADPH] large chain | |||||
TGAAAATAAAGCACGTCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/499570‑499713‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatgcTTTAAATT‑GCGCATAGTCATTTTCTTTACATGCGTGCTGCAATAAGAAAATAGATTCCGGATTAAAAGCATGATGTTGACCTTGTTGTCTCCATTGGAATGTACTACCTGATGCAAGATAATTATCATCACTTTGTTGA < USA300TCH1516_ALE/499723‑499585 TGAAAATAAAGCACGTCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCAAAAAACAATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACT > 1:620296/1‑140 GAAAATAAAGCACGTCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTA < 1:134695/140‑1 GATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCTTTAAATT‑GCGCATAGTCATT > 1:278596/1‑140 GATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCTTTAAATT‑GCGCATAGTCATT > 1:612410/1‑140 CGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGCAATTTA‑AAGCATAGTCATTTTCTTTACATGCGTGCTGCAATAAGAAAATAGATTCCGGATTAAAAGCATGATGTTGACCTTGTTGTCTC > 2:278596/1‑140 CGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGC‑GCAATTTAAAGCATAGTCATTTTCTTTACATGCGTGCTGCAATAAGAAAATAGATTCCGGATTAAAAGCATGATGTTGACCTTGTTGTCTC > 2:612410/1‑140 AGCACGCATGTAAAGAAAATGACTATGCGCAATTTA‑AAGCATAGTCATTTTCTTTACATGCGTGCTGCAATAAGAAAATAGATTCCGGATTAAAAGCATGATGTTGACCTTGTTGTCTCCATTGGAATGTACTACCTGAT > 1:130767/1‑140 TATGCTTTAAATG‑GCGTATAGACAGTTTCTTTACATGGGTGGTCCAATAAGAAAATAGATTCCGGATTAAAAGCATGATGTTGTCCTTGTTGTCTCCATTGGAATGTACTACCTGATGCAAGATAATTATCATCACTTTG < 2:340449/140‑1 GCTTTAAATT‑GCGCATAGTTATTTTCTTTACATGCGTGCTGCAATAAGAAAATAGATTCCGGATTAAAAGCATGATGTTGACCTTCTTGTCTCCATTGGAATGTACTACCTGATGCAAGATAATTATCATCACTTTGTTG < 1:445077/140‑1 CTTTAAATT‑GCGCATAGTCATTTTCTTTACATGCGTGCTGCAATAAGAAAATAGATTCCGGATTAAAAGCATGATGTTGACCTTGTTGTCTCCATTGGAATGTACTACCTGATGCAAGATAATTATCATCACTTTGTTGA < 2:213976/140‑1 TGAAAATAAAGCACGTCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/499570‑499713‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatgcTTTAAATT‑GCGCATAGTCATTTTCTTTACATGCGTGCTGCAATAAGAAAATAGATTCCGGATTAAAAGCATGATGTTGACCTTGTTGTCTCCATTGGAATGTACTACCTGATGCAAGATAATTATCATCACTTTGTTGA < USA300TCH1516_ALE/499723‑499585 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |