New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 499713	59 (1.080)	5 (0.100)	3/248	NT	8.0%	coding (2417/4500 nt)	gltA	Glutamate synthase [NADPH] large chain
	?	USA300TCH1516_ALE	= 499723	58 (1.100)					coding (2427/4500 nt)	gltA	Glutamate synthase [NADPH] large chain

ATAAAGCACGTCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAACGCTTTAATAC  >  USA300TCH1516_ALE/499575‑499851                                                                                                                                           |                                                                                                                                            aTAAAGCACGTCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATgcg                                                                                                                                            >  2:589470/1‑140 (MQ=255)    aaGCACGTCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATTATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑aa                                                                                                                                        <  1:39147/140‑1 (MQ=255)    aaGCACGTCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑aa                                                                                                                                        >  1:212649/1‑140 (MQ=255)      gCACGTCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AAtt                                                                                                                                      >  2:513826/1‑140 (MQ=255)       cACGTCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATACGGAATCTATTTTCTTATTGCAACACGCATATAAAGAAAATAATTATGCGC‑AAttt                                                                                                                                     >  2:268069/1‑140 (MQ=255)           tCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAg                                                                                                                                 <  2:213976‑M2/140‑2 (MQ=255)            caacaaAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAAGAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATAACTATGCGC‑AATTTAAAgc                                                                                                                                <  1:445077‑M2/140‑3 (MQ=255)               caaAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGACAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGGACCACCCATGTAAAGAAACTGTCTATACGC‑CATTTAAAgcata                                                                                                                             <  2:340449‑M2/140‑6 (MQ=255)                  aGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATActc                                                                                                                          <  2:464884/140‑1 (MQ=255)                   gTGATGATAAGTATCTTGCATCAGGTAGTAAATTCCGATGGAGATAACGAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGTAAGTGACTATGCGC‑ACGTTACAGCATActct                                                                                                                         <  2:441172/140‑1 (MQ=255)                     gatgatAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCtttaaattgcgcatagtcatt                                                                                                                        >  1:612410‑M1/1‑119 (MQ=255)                     gatgatAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCtttaaattgcgcatagtcatt                                                                                                                        >  1:278596‑M1/1‑119 (MQ=255)                      atgatAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGaa                                                                                                                      >  2:560157/1‑140 (MQ=255)                          caaTTATCCTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTATTTTATACTCTGAAGCgg                                                                                                                  <  1:460821/139‑1 (MQ=255)                             ttATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTTTTATTGCAGTACGCATGTAAAGAAAATGACTATGCGC‑AATGTAAAGCATACTCTGAAGCGGTGa                                                                                                               <  1:174811/140‑1 (MQ=255)                                tCTTGCATCAGGTAGTACATTCCAATGGTGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACa                                                                                                            <  2:315098/140‑1 (MQ=255)                                tCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACa                                                                                                            >  2:599221/1‑140 (MQ=255)                                  ttGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACaaa                                                                                                          >  1:502192/1‑140 (MQ=255)                                   tGCATAAGTTACTACATTCCAATGGAGCCACCGCAATCAGAACACTGCTTTAAATCCGGTTTTGATTTTCTTATTACAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTGTGAAGCGGCGAACacaa                                                                                                         >  2:469965/1‑140 (MQ=255)                                      aTCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCTT‑TAAATTGCgcatagtcattttctttacatgcgtgct                                                                                                      >  1:130767‑M2/1‑112 (MQ=255)                                       tCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGA‑AATATCAGACATACTCTGAAGCGGTGAACAAAAATAg                                                                                                     <  1:322015/140‑1 (MQ=255)                                            tagtaCATTCCAATGGAGACAACAAGGTCAACATCATGCTTTGAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAg                                                                                                <  2:91491/140‑1 (MQ=255)                                               caCATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGTAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATc                                                                                             <  1:564876/139‑1 (MQ=255)                                                        aTGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGAc                                                                                    >  1:423444/1‑140 (MQ=255)                                                         tGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACa                                                                                   >  1:65017/1‑140 (MQ=255)                                                           gagaCAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCTTTAAATTGCcatagtcattttctttacatgcgtgctgcaataagaaaatagattccg                                                                                   >  2:612410‑M2/1‑92 (MQ=255)                                                           gagaCAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCTT‑TAAATTGCgcatagtcattttctttacatgcgtgctgcaataagaaaatagattccg                                                                                 >  2:278596‑M2/1‑91 (MQ=255)                                                           gagaCAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACAtt                                                                                 <  1:283788/140‑1 (MQ=255)                                                            agaCAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACAttt                                                                                <  1:583364/140‑1 (MQ=255)                                                                 acaaGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGAGCACATTAGACATTTACTTg                                                                           >  1:286128/1‑140 (MQ=255)                                                                  caaGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGa                                                                          >  2:607829/1‑140 (MQ=255)                                                                         aaCATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTaaa                                                                   <  1:645887/140‑1 (MQ=255)                                                                           catcatGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGc                                                                 <  2:530248/140‑1 (MQ=255)                                                                            atcatGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCa                                                                >  2:420892/1‑140 (MQ=255)                                                                              catGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACGATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGAAATTTACTTCAATTTAAAGCagg                                                              >  2:465959/1‑138 (MQ=255)                                                                               atGCTTTTAATCCGGAATCTAGTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACACTGAAGCGGTGAACAAAAATAGAACAGATCACAAAAGACAGTTAATTCAATTaaagtaaaat                                                             >  2:457630/1‑133 (MQ=255)                                                                                   ttttTATCCGGAAGCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACGGATCACATTAGACATTTACTTGAATTTAAAGCATGGacac                                                         <  1:476012/140‑1 (MQ=255)                                                                                   ttttAATTCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAAGAGAACAGACCACATTAGACATTTACTTGAATTTAAAGCATGTacac                                                         <  1:455532/140‑1 (MQ=255)                                                                                      tcaTCCGGAATCGATTTTCGTATGGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAACAATAGACCAGAGCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGa                                                      <  2:109677/138‑1 (MQ=255)                                                                                      tAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTGTGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACATAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAGGCATGTACACCGa                                                      >  2:492212/1‑140 (MQ=255)                                                                                       aaTCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGAt                                                     <  1:577858/140‑1 (MQ=255)                                                                                         tCCGGAATCTATTTGATTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGTGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTg                                                   <  1:203213/140‑1 (MQ=255)                                                                                           cGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCgcaatttaaagcatagtcattttctttacatgcgtgctgcaataagaaaatagattccggattaaaagcatgatgttgaccttgttgtctc                                                  >  2:612410‑M1/1‑49 (MQ=255)                                                                                           cGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCgcaatttaaagcatagtcattttctttacatgcgtgctgcaataagaaaatagattccggattaaaagcatgatgttgaccttgttgtctc                                                  >  2:278596‑M1/1‑49 (MQ=255)                                                                                             gAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACAt                                               <  1:298275/140‑1 (MQ=255)                                                                                             gAATCTATTTTCTTATTGCAGCAAGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACAt                                               <  1:577944/140‑1 (MQ=255)                                                                                                tCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGa                                            <  2:212649/140‑1 (MQ=255)                                                                                                tCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACACTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGACTTTAAAGCATGTACACCGATTGAAATCGa                                            >  1:207076/1‑140 (MQ=255)                                                                                                 cgaTTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCACGTACACCCACCGCCATCGAc                                           <  2:660588/138‑1 (MQ=255)                                                                                                 ccaTTTTCTTATTGCACCACGCAAGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTGTACATTTCCTTGAATTTAAAGCATGTACACCGATTGACATCGAc                                           <  2:633608/138‑1 (MQ=255)                                                                                                 cTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGAc                                           >  1:372300/1‑140 (MQ=255)                                                                                                 cTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGAc                                           >  1:530840/1‑140 (MQ=255)                                                                                                 cTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGAACACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGaa                                           >  1:238394/1‑139 (MQ=255)                                                                                                  tATTTTCTTATTGCAGCACGCATGTAACGAAAATCGCTATGCGC‑AATTTAAAGCATAATCTGAAGCGGAGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTCCACCGCTTGACATCGAcc                                          >  1:191151/1‑140 (MQ=255)                                                                                                    ttttCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAAAACAGATAACATTAGACATTTACATGAATTCAAAGCATGTACACCGATTGACATCGACCaa                                        >  1:270945/1‑140 (MQ=255)                                                                                                     tttCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAg                                       <  1:607829/140‑1 (MQ=255)                                                                                                     ttacTTATTGCAGCATGCATGTAAAGAAAATGACTATTCGC‑AATTCAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATTACAGTAGACATTTGCTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAg                                       <  2:502192/137‑1 (MQ=255)                                                                                                      ttCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAACGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGGATTTAAAGCATGTACACCGATTGCCACCGACAAAGt                                      >  2:56418/1‑140 (MQ=255)                                                                                                         ttATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGa                                   <  2:65017/140‑1 (MQ=255)                                                                                                              gcagcaCGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCgg                              >  2:602473/1‑140 (MQ=255)                                                                                                                agcaCGCATGTAAAGAAAATGACTATGCgcaatttaaagcatagtcattttctttacatgcgtgctgcaataagaaaatagattccggattaaaagcatgatgttgaccttgttgtctccattggaatgtactacctgat                             >  1:130767‑M1/1‑28 (MQ=255)                                                                                                                  caCGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAg                          <  1:268069/140‑1 (MQ=255)                                                                                                                   aCGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGt                         <  1:427209/140‑1 (MQ=255)                                                                                                                      aaTGTAAACAAAATGACTATGCGC‑AATTTAAAGCATACTCTGATACAAAAAAAAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGAc                      <  2:340352/139‑1 (MQ=255)                                                                                                                        tGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATAAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACAt                    >  1:90463/1‑140 (MQ=255)                                                                                                                           aaaGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGt                 <  2:392472/140‑1 (MQ=255)                                                                                                                            aaGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTc                <  1:599221/140‑1 (MQ=255)                                                                                                                                aaaTGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAAc            <  1:113469/140‑1 (MQ=255)                                                                                                                                aaaTGACGATTCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACTAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAAc            <  2:395915/140‑1 (MQ=255)                                                                                                                                 aaTGACTATGCGC‑AATTTAAAgcatagtcattttctttacatgcgtgctgcaataagaaaatagattccggattaaaagcatgatgttgaccttgttgtctccattggaatgtactacctgatgcaagataattatcatc           >  1:612410‑M2/1‑21 (MQ=255)                                                                                                                                 aaTGACTATGCGC‑AATTTAAAgcatagtcattttctttacatgcgtgctgcaataagaaaatagattccggattaaaagcatgatgttgaccttgttgtctccattggaatgtactacctgatgcaagataattatcatc           >  1:278596‑M2/1‑21 (MQ=255)                                                                                                                                 aaTGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCGAACg           <  2:462494/140‑1 (MQ=255)                                                                                                                                   tGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGGGAACAACAATAGAACAGATCACATTAGACATTTACATGAATTTAAAACATGTACACCTAACATCATCGACACAATTGCACCGGTAAGTGACATTGACAAACGcg         >  1:138032/1‑139 (MQ=255)                                                                                                                                     aCTATGCGC‑AATTTAATGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAACGCttt       >  1:372191/1‑140 (MQ=255)                                                                                                                                      cTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGATATTGTCAAACGCTTTa      <  1:330386/140‑1 (MQ=255)                                                                                                                                       tATGCtttaaatggcgtatagacagtttctttacatgggtggtccaataagaaaatagattccggattaaaagcatgatgttgtccttgttgtctccattggaatgtactacctgatgcaagataattatcatcactttg      <  2:340449‑M1/140‑136 (MQ=255)                                                                                                                                       tATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATAAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAACGCTTTaa     >  1:206346/1‑140 (MQ=255)                                                                                                                                          gCtttaaattgcgcatagttattttctttacatgcgtgctgcaataagaaaatagattccggattaaaagcatgatgttgaccttcttgtctccattggaatgtactacctgatgcaagataattatcatcactttgttg   <  1:445077‑M1/140‑139 (MQ=255)                                                                                                                                           ctttaaattgcgcatagtcattttctttacatgcgtgctgcaataagaaaatagattccggattaaaagcatgatgttgaccttgttgtctccattggaatgtactacctgatgcaagataattatcatcactttgttga  <  2:213976‑M1/140‑140 (MQ=255)                                                                                                                                           |                                                                                                                                            ATAAAGCACGTCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAACGCTTTAATAC  >  USA300TCH1516_ALE/499575‑499851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.