New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 499713	59 (1.080)	5 (0.100)	3/248	NT	8.0%	coding (2417/4500 nt)	gltA	Glutamate synthase [NADPH] large chain
	?	USA300TCH1516_ALE	= 499723	58 (1.100)					coding (2427/4500 nt)	gltA	Glutamate synthase [NADPH] large chain

TCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAACGCTTTAATACAGGGGCGATGA  >  USA300TCH1516_ALE/499585‑499862                                                                                                                                            |                                                                                                                                            tCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAg                                                                                                                                            <  2:213976‑M2/140‑2 (MQ=255)  caacaaAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAAGAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATAACTATGCGC‑AATTTAAAgc                                                                                                                                           <  1:445077‑M2/140‑3 (MQ=255)     caaAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGACAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGGACCACCCATGTAAAGAAACTGTCTATACGC‑CATTTAAAgcata                                                                                                                                        <  2:340449‑M2/140‑6 (MQ=255)        aGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATActc                                                                                                                                     <  2:464884/140‑1 (MQ=255)         gTGATGATAAGTATCTTGCATCAGGTAGTAAATTCCGATGGAGATAACGAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGTAAGTGACTATGCGC‑ACGTTACAGCATActct                                                                                                                                    <  2:441172/140‑1 (MQ=255)            atgatAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGaa                                                                                                                                 >  2:560157/1‑140 (MQ=255)                caaTTATCCTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTATTTTATACTCTGAAGCgg                                                                                                                             <  1:460821/139‑1 (MQ=255)                   ttATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTTTTATTGCAGTACGCATGTAAAGAAAATGACTATGCGC‑AATGTAAAGCATACTCTGAAGCGGTGa                                                                                                                          <  1:174811/140‑1 (MQ=255)                      tCTTGCATCAGGTAGTACATTCCAATGGTGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACa                                                                                                                       <  2:315098/140‑1 (MQ=255)                      tCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACa                                                                                                                       >  2:599221/1‑140 (MQ=255)                        ttGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACaaa                                                                                                                     >  1:502192/1‑140 (MQ=255)                         tGCATAAGTTACTACATTCCAATGGAGCCACCGCAATCAGAACACTGCTTTAAATCCGGTTTTGATTTTCTTATTACAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTGTGAAGCGGCGAACacaa                                                                                                                    >  2:469965/1‑140 (MQ=255)                            aTCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCTT‑TAAATTGCgcatagtcattttctttacatgcgtgct                                                                                                                 >  1:130767‑M2/1‑112 (MQ=255)                             tCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGA‑AATATCAGACATACTCTGAAGCGGTGAACAAAAATAg                                                                                                                <  1:322015/140‑1 (MQ=255)                                  tagtaCATTCCAATGGAGACAACAAGGTCAACATCATGCTTTGAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAg                                                                                                           <  2:91491/140‑1 (MQ=255)                                     caCATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGTAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATc                                                                                                        <  1:564876/139‑1 (MQ=255)                                              aTGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGAc                                                                                               >  1:423444/1‑140 (MQ=255)                                               tGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACa                                                                                              >  1:65017/1‑140 (MQ=255)                                                 gagaCAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCTTTAAATTGCcatagtcattttctttacatgcgtgctgcaataagaaaatagattccg                                                                                              >  2:612410‑M2/1‑92 (MQ=255)                                                 gagaCAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCTT‑TAAATTGCgcatagtcattttctttacatgcgtgctgcaataagaaaatagattccg                                                                                            >  2:278596‑M2/1‑91 (MQ=255)                                                 gagaCAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACAtt                                                                                            <  1:283788/140‑1 (MQ=255)                                                  agaCAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACAttt                                                                                           <  1:583364/140‑1 (MQ=255)                                                       acaaGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGAGCACATTAGACATTTACTTg                                                                                      >  1:286128/1‑140 (MQ=255)                                                        caaGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGa                                                                                     >  2:607829/1‑140 (MQ=255)                                                               aaCATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTaaa                                                                              <  1:645887/140‑1 (MQ=255)                                                                 catcatGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGc                                                                            <  2:530248/140‑1 (MQ=255)                                                                  atcatGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCa                                                                           >  2:420892/1‑140 (MQ=255)                                                                    catGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACGATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGAAATTTACTTCAATTTAAAGCagg                                                                         >  2:465959/1‑138 (MQ=255)                                                                     atGCTTTTAATCCGGAATCTAGTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACACTGAAGCGGTGAACAAAAATAGAACAGATCACAAAAGACAGTTAATTCAATTaaagtaaaat                                                                        >  2:457630/1‑133 (MQ=255)                                                                         ttttTATCCGGAAGCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACGGATCACATTAGACATTTACTTGAATTTAAAGCATGGacac                                                                    <  1:476012/140‑1 (MQ=255)                                                                         ttttAATTCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAAGAGAACAGACCACATTAGACATTTACTTGAATTTAAAGCATGTacac                                                                    <  1:455532/140‑1 (MQ=255)                                                                            tcaTCCGGAATCGATTTTCGTATGGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAACAATAGACCAGAGCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGa                                                                 <  2:109677/138‑1 (MQ=255)                                                                            tAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTGTGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACATAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAGGCATGTACACCGa                                                                 >  2:492212/1‑140 (MQ=255)                                                                             aaTCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGAt                                                                <  1:577858/140‑1 (MQ=255)                                                                               tCCGGAATCTATTTGATTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGTGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTg                                                              <  1:203213/140‑1 (MQ=255)                                                                                   gAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACAt                                                          <  1:298275/140‑1 (MQ=255)                                                                                   gAATCTATTTTCTTATTGCAGCAAGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACAt                                                          <  1:577944/140‑1 (MQ=255)                                                                                      tCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGa                                                       <  2:212649/140‑1 (MQ=255)                                                                                      tCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACACTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGACTTTAAAGCATGTACACCGATTGAAATCGa                                                       >  1:207076/1‑140 (MQ=255)                                                                                       cgaTTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCACGTACACCCACCGCCATCGAc                                                      <  2:660588/138‑1 (MQ=255)                                                                                       ccaTTTTCTTATTGCACCACGCAAGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTGTACATTTCCTTGAATTTAAAGCATGTACACCGATTGACATCGAc                                                      <  2:633608/138‑1 (MQ=255)                                                                                       cTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGAc                                                      >  1:530840/1‑140 (MQ=255)                                                                                       cTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGAc                                                      >  1:372300/1‑140 (MQ=255)                                                                                       cTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGAACACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGaa                                                      >  1:238394/1‑139 (MQ=255)                                                                                        tATTTTCTTATTGCAGCACGCATGTAACGAAAATCGCTATGCGC‑AATTTAAAGCATAATCTGAAGCGGAGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTCCACCGCTTGACATCGAcc                                                     >  1:191151/1‑140 (MQ=255)                                                                                          ttttCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAAAACAGATAACATTAGACATTTACATGAATTCAAAGCATGTACACCGATTGACATCGACCaa                                                   >  1:270945/1‑140 (MQ=255)                                                                                           tttCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAg                                                  <  1:607829/140‑1 (MQ=255)                                                                                           ttacTTATTGCAGCATGCATGTAAAGAAAATGACTATTCGC‑AATTCAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATTACAGTAGACATTTGCTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAg                                                  <  2:502192/137‑1 (MQ=255)                                                                                            ttCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAACGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGGATTTAAAGCATGTACACCGATTGCCACCGACAAAGt                                                 >  2:56418/1‑140 (MQ=255)                                                                                               ttATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGa                                              <  2:65017/140‑1 (MQ=255)                                                                                                    gcagcaCGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCgg                                         >  2:602473/1‑140 (MQ=255)                                                                                                        caCGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAg                                     <  1:268069/140‑1 (MQ=255)                                                                                                         aCGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGt                                    <  1:427209/140‑1 (MQ=255)                                                                                                            aaTGTAAACAAAATGACTATGCGC‑AATTTAAAGCATACTCTGATACAAAAAAAAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGAc                                 <  2:340352/139‑1 (MQ=255)                                                                                                              tGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATAAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACAt                               >  1:90463/1‑140 (MQ=255)                                                                                                                 aaaGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGt                            <  2:392472/140‑1 (MQ=255)                                                                                                                  aaGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTc                           <  1:599221/140‑1 (MQ=255)                                                                                                                      aaaTGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAAc                       <  1:113469/140‑1 (MQ=255)                                                                                                                      aaaTGACGATTCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACTAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAAc                       <  2:395915/140‑1 (MQ=255)                                                                                                                       aaTGACTATGCGC‑AATTTAAAgcatagtcattttctttacatgcgtgctgcaataagaaaatagattccggattaaaagcatgatgttgaccttgttgtctccattggaatgtactacctgatgcaagataattatcatc                      >  1:278596‑M2/1‑21 (MQ=255)                                                                                                                       aaTGACTATGCGC‑AATTTAAAgcatagtcattttctttacatgcgtgctgcaataagaaaatagattccggattaaaagcatgatgttgaccttgttgtctccattggaatgtactacctgatgcaagataattatcatc                      >  1:612410‑M2/1‑21 (MQ=255)                                                                                                                       aaTGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCGAACg                      <  2:462494/140‑1 (MQ=255)                                                                                                                         tGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGGGAACAACAATAGAACAGATCACATTAGACATTTACATGAATTTAAAACATGTACACCTAACATCATCGACACAATTGCACCGGTAAGTGACATTGACAAACGcg                    >  1:138032/1‑139 (MQ=255)                                                                                                                           aCTATGCGC‑AATTTAATGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAACGCttt                  >  1:372191/1‑140 (MQ=255)                                                                                                                            cTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGATATTGTCAAACGCTTTa                 <  1:330386/140‑1 (MQ=255)                                                                                                                             tATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATAAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAACGCTTTaa                >  1:206346/1‑140 (MQ=255)                                                                                                                                     aaTTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAACGCTTTAATACAggg         <  1:421275/140‑1 (MQ=255)                                                                                                                                     aaTTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAACGCTTTAATAAAggg         >  1:382959/1‑140 (MQ=255)                                                                                                                                        ttAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAACGCTTTAATACAGGGGCg      <  1:542542/140‑1 (MQ=255)                                                                                                                                         tAAAGCATACTCTGAAGTCGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTTACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAACGCTTTAATACAGGGGCGa     <  1:14323/140‑1 (MQ=255)                                                                                                                                         tAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACTGATCTCATTAGACATTTACTTGAATTTAAAGCATGTACTCCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAACGCTTTAATACAGGGGCGa     <  1:579957/140‑1 (MQ=255)                                                                                                                                           aaGCATACTCTGAAGCGGTGAACAAAAATAGAACAGTTCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGATTAAGTTGAACCGGTAAGTGACATTGTCAAACGCTTTAATACAGGGGCGATg   <  1:121796/140‑1 (MQ=255)                                                                                                                                            aGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAACGCTTTAATACAGGGGCGATGa  <  1:213976/140‑1 (MQ=255)                                                                                                                                            |                                                                                                                                            TCAACAAAGTGATGATAATTATCTTGCATCAGGTAGTACATTCCAATGGAGACAACAAGGTCAACATCATGCTTTTAATCCGGAATCTATTTTCTTATTGCAGCACGCATGTAAAGAAAATGACTATGCGC‑AATTTAAAGCATACTCTGAAGCGGTGAACAAAAATAGAACAGATCACATTAGACATTTACTTGAATTTAAAGCATGTACACCGATTGACATCGACCAAGTTGAACCGGTAAGTGACATTGTCAAACGCTTTAATACAGGGGCGATGA  >  USA300TCH1516_ALE/499585‑499862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.