| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1766474 = | 48 (0.880) | 4 (0.080) | 3/240 | NT | 8.9% | coding (379/561 nt) | tag | DNA‑3‑methyladenine glycosylase 1 |
| ? | USA300TCH1516_ALE | 1766523 = | 37 (0.730) | coding (428/561 nt) | tag | DNA‑3‑methyladenine glycosylase 1 | |||||
TGTGCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1766619‑1766474‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atactgcaaCACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAATTTGC > USA300TCH1516_ALE/1766523‑1766661 TGTGCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATA > 1:273160/1‑140 GCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTG > 1:474988/1‑140 GCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTG > 2:1278/1‑140 CATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGC < 2:149973/140‑1 CATCATATAAACCGGCTGCTGCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGC < 2:150232/140‑1 ATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTACACCCCTATTGGTTTAAATCTTTAGATAGTTGTGTTACAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCA > 1:56842/1‑140 ATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAATCCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCA < 1:410175/140‑1 TCATATTAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCTTATTTTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAA < 1:42439/140‑1 TCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAA < 2:595341/140‑1 CATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGCCCTAAAAATTTAAACCCGGATTGGTTTAAATCTTTAGATAGGTGTGTTGCAGTATCATCAACTGTGATACGGTCAGAAGCATGTTCATACTGCtaa > 2:198914/1‑137 AATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTATGATGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAACACAACTATCTAAAGATTTAAAACAATACG > 1:212944/1‑140 CCGTATTGTTTTAAATCTTTAGAAAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTAT < 2:212944/140‑1 GTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTGGTTTTTAGAAGCAGCCGGTTTATATGTTGCAC > 1:259972/1‑140 GTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCAC > 1:259975/1‑140 TACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATT < 1:470533/140‑1 CTGCAACCCAACTATCTAAAGCTTTAAAACAATACGGGTTTAAATTTTTAGGCCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAA < 2:324380/140‑1 CTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAA < 2:46490/140‑1 TGCAACACAACTATCTAAATATTTAAAACAATGCGGGTTTAGACTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAAT < 2:118557/140‑1 TGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTGTAGGTCCAGTAACAGTATTTGCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAAT < 2:519678/140‑1 ACACAACTTTTTAAAGATTTAAAACAATATGGGTGTAAATTTTTAGGTCCAGTAACAGTCTTTTCGTGTTTAGAAGCAGCCGGTTTATATGATGCACATTTAGAAGATTGTCCATCAAAGCCTAAACATAATTAATTTGC < 1:293343/140‑1 TGTGCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1766619‑1766474‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atactgcaaCACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAATTTGC > USA300TCH1516_ALE/1766523‑1766661 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |