| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2681424 | 107 (1.360) | 3 (0.040) | 3/250 | 8.8 | 3.0% | intergenic (‑459/+120) | USA300HOU_RS13810/mvaA | hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase |
| ? | USA300TCH1516_ALE | = 2681449 | 98 (1.400) | intergenic (‑484/+95) | USA300HOU_RS13810/mvaA | hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATATCAAAATGATAGGAACTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2681271‑2681424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacttctatcacACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTATTGTCTCGA < USA300TCH1516_ALE/2681449‑2681314 ATATCAAAATGATAGGAACTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAA > 1:783948/1‑141 CAAAATGATAGGAACTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAAC > 1:732822/1‑141 AAAATGATAGGAACTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACT < 1:166148/141‑1 ATAGGAACTTGAAGTATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCAAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATC > 1:508687/1‑141 ATAGGAACTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATC > 1:731637/1‑141 CTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACACGCATACAGGAAATTTAAGCGTTCGTGATAGAAGTTTTTTGATTA > 2:871631/1‑141 TACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATT > 2:377954/1‑141 TAACCAAAAACCTTCTACCCCACACAAACAGGAAATTGAATCTTTCGTGATAGAAGTTTTTTGATCAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAG < 1:871631/141‑1 AAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTT > 2:899937/1‑141 AAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTTTTTATAGGATTCAAATTTGGAACGAGTTTCTTA < 1:445015/141‑1 ACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCGTCATGAGACGAATTCATTATAGGATTCGTGTTTGGAACGAGTTTCTTATTG < 2:654691/141‑1 TATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTATTGTCTCG < 2:849277/141‑1 ATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTATTGTCTCGA > 1:343779/1‑141 ATATCAAAATGATAGGAACTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2681271‑2681424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacttctatcacACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTATTGTCTCGA < USA300TCH1516_ALE/2681449‑2681314 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |