| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 450716 | 30 (0.230) | 95 (0.840) | 75/244 | 0.4 | 76.2% | intergenic (+83/‑281) | speC_3/tst_2 | Exotoxin type C/Toxic shock syndrome toxin‑1 |
| ? | USA300TCH1516_ALE | 451778 = | 33 (0.290) | intergenic (+77/‑369) | tst_2/USA300HOU_RS02140 | Toxic shock syndrome toxin‑1/hypothetical protein | |||||
Only 100 of 147 total aligned reads displayed.
CATGGCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACAACGGGATCAGTTTTATTTAACGAACATTATAGAT > USA300TCH1516_ALE/450576‑450855 | cATGGCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTT < 1:727248‑M1/141‑1 (MQ=255) aTGGCAGATTTCAGAGATGACACTAATAGAAGTAACAGAAAAGGAAATATAGAATAGTCATGACAGTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCttttt < 1:881291/141‑2 (MQ=14) aTGGCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTt < 1:489507‑M1/141‑2 (MQ=255) aTGGCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTt < 1:933194‑M1/141‑2 (MQ=255) aTGGCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTt > 4:107390‑M1/1‑140 (MQ=255) gCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCAGCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgt < 4:131295‑M1/141‑5 (MQ=255) cAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtg < 3:432878‑M1/141‑6 (MQ=255) cAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCAGGACATGCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtg < 1:306765‑M1/141‑6 (MQ=255) aGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgt > 2:4828‑M1/1‑135 (MQ=255) aTGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGtt > 3:341769/1‑141 (MQ=255) gTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttgga > 3:447515‑M1/1‑131 (MQ=255) tCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggag > 1:747349‑M1/1‑130 (MQ=255) aGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagat < 1:580362‑M1/141‑16 (MQ=255) gATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatg < 2:1022606‑M1/141‑17 (MQ=255) gATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatg < 1:553617‑M1/141‑17 (MQ=255) gATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatg < 2:894796‑M1/141‑17 (MQ=255) ggCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTga < 2:967677/141‑1 (MQ=255) ttGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgta < 1:41841‑M1/141‑30 (MQ=255) gATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatc > 4:281331‑M1/1‑110 (MQ=255) aCATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatg > 1:529731‑M1/1‑106 (MQ=255) aCATTGAAGTAAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatg < 4:441985‑M1/141‑36 (MQ=255) ttGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaat < 1:87812‑M1/141‑39 (MQ=255) gTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCa > 3:277943/1‑141 (MQ=255) tGAATATAAAATAACCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGACTACATGTTGATTCGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCaa < 3:200506/141‑1 (MQ=255) aaTATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAat < 2:857793/141‑1 (MQ=255) tataAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTAGATGGGTCCAAatat < 1:568264/141‑1 (MQ=255) ataAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacac < 1:365097‑M1/141‑50 (MQ=255) taAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacacc < 1:51746‑M1/141‑51 (MQ=255) aataatCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaat < 4:207401‑M1/141‑54 (MQ=255) aatCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTtttttttgttgtgatgaaaatgaagcgtatcgatgaataataaaaacaccaataaa > 2:1018212‑M1/1‑85 (MQ=255) atCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaa > 3:194102‑M1/1‑84 (MQ=255) cATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAaga < 1:248642/141‑1 (MQ=255) cATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAaga < 1:933841/141‑1 (MQ=255) aTGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaactt > 1:494643‑M1/1‑81 (MQ=255) aTGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAagag > 2:115965/1‑141 (MQ=255) tctcTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGTCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaa < 2:922084‑M1/141‑68 (MQ=255) tctcTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaa > 1:456957‑M1/1‑74 (MQ=255) tctcTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaa < 1:1015610‑M1/141‑68 (MQ=255) ctctAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAAt > 1:308947/1‑141 (MQ=255) ctAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatag > 4:63864‑M1/1‑71 (MQ=255) aaTAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATc > 2:564566/1‑141 (MQ=255) aTAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttga < 2:576884‑M1/141‑75 (MQ=255) aTAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttga < 4:25482‑M1/141‑75 (MQ=255) aGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgata > 2:351522‑M1/1‑65 (MQ=255) aaGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatact > 2:547826‑M1/1‑63 (MQ=255) aaGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatact > 2:594013‑M1/1‑63 (MQ=255) aaGCTGGTATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatact < 2:680662‑M1/141‑79 (MQ=255) gCTGTCATCGGAAACACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcggatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatactta > 3:253817‑M1/1‑61 (MQ=255) cTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttgt > 3:32656‑M1/1‑60 (MQ=255) gTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatag < 3:107390‑M1/141‑84 (MQ=255) tCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagt < 1:325822‑M1/141‑85 (MQ=255) cGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcg > 2:629368‑M1/1‑53 (MQ=255) ggAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCctatcta < 4:88772/141‑1 (MQ=255) gAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcg < 1:1039042‑M1/141‑91 (MQ=255) aaaaCAAGAAGTTAAGTGACAACGGCCAACATGTTGCTTAGCTTCTTTTttgtgttggagggatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgtt < 1:386406‑M1/141‑93 (MQ=255) aaaCAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttg > 2:585458‑M1/1‑48 (MQ=255) aaaCAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttg < 3:399480‑M1/141‑94 (MQ=255) aaaCAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttg > 1:705361‑M1/1‑48 (MQ=255) aaaCAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgt < 2:693368‑M1/110‑63 (MQ=255) aaCAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgt < 2:901266‑M1/141‑95 (MQ=255) aaCAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgt > 3:137709‑M1/1‑47 (MQ=255) aCAAGAAGTTAAGTGACAACGGCCTACCTGTTGCTTAGCTCCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtc > 4:40307‑M1/1‑46 (MQ=255) aagaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtcct < 2:747349‑M1/141‑98 (MQ=255) aagaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtcct < 1:86233‑M1/141‑98 (MQ=255) agaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtcctt < 2:169922‑M1/141‑99 (MQ=255) gaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgtttgagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttt > 4:80222‑M1/1‑42 (MQ=255) gaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttt < 4:192268‑M1/141‑100 (MQ=255) gaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTAGATTGGTCCAATTATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCGATCTATCGGGTGTGa > 1:260625/1‑141 (MQ=255) gTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcg < 1:144161‑M1/141‑103 (MQ=255) gTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcg > 2:753322‑M1/1‑39 (MQ=255) ttAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGca < 4:222525/141‑1 (MQ=255) tAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtg > 2:14641‑M1/1‑37 (MQ=255) aGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACaa > 2:1046853/1‑141 (MQ=255) gTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgaca > 4:416378‑M1/1‑34 (MQ=255) gTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgaca < 2:529734‑M1/141‑108 (MQ=255) tGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacat > 1:205816‑M1/1‑33 (MQ=255) tGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACAACg < 2:736377/141‑1 (MQ=255) aCAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaagaaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatga < 2:9341‑M1/141‑111 (MQ=255) aCAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACAACggg < 2:733255/141‑1 (MQ=255) cAACAGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaa > 2:301485‑M1/1‑30 (MQ=255) aaCGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACAACGGGAt < 1:516272/141‑1 (MQ=255) ccTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttataatcgcgcgatgtccttttcgtgacatgacacaatg > 4:344968‑M1/1‑24 (MQ=255) cTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgatacaatgt > 3:406655‑M1/1‑23 (MQ=255) cATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtgga < 1:159012‑M1/141‑122 (MQ=255) gCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaaaat > 4:323495‑M1/1‑14 (MQ=255) cTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacata > 1:115644‑M1/1‑13 (MQ=255) ttAGCTTCTTTTttgtttttgatagatgaacatgaagcgtatcgatgaataataaaaacactaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgatatgaaacaatgtggaaaaaatag > 2:940430‑M1/1‑12 (MQ=255) ttAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatag < 3:99888‑M1/141‑130 (MQ=255) ttAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatag < 1:77904‑M1/141‑130 (MQ=255) ttAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACAACGGGATCAGTTTTATTTAACGaa > 1:602396/1‑141 (MQ=255) tggctTCTTTTttgtgttggggagatgaaaatgaagcgtatcgatgaataataatgacactaataagccttgtggaaatagttgattcttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaatcatagt < 2:794837‑M1/139‑131 (MQ=255) aGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagtt > 4:154296‑M1/1‑10 (MQ=255) tcttTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaat < 1:2255‑M1/141‑136 (MQ=255) cttTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaatt > 1:688784‑M1/1‑5 (MQ=255) cttTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagtcaaatt > 4:366692‑M1/1‑5 (MQ=255) ttttttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaattg > 1:1010250‑M1/1‑4 (MQ=255) ttttttttttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtctcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaattga > 2:447192‑M1/1‑3 (MQ=255) tttttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaattga > 4:169619‑M1/1‑3 (MQ=255) tttttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaattga > 3:123088‑M1/1‑3 (MQ=255) ttttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaattgag < 1:1021749‑M1/141‑140 (MQ=255) | CATGGCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACAACGGGATCAGTTTTATTTAACGAACATTATAGAT > USA300TCH1516_ALE/450576‑450855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |