| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 450716 | 30 (0.230) | 95 (0.840) | 75/244 | 0.4 | 76.2% | intergenic (+83/‑281) | speC_3/tst_2 | Exotoxin type C/Toxic shock syndrome toxin‑1 |
| ? | USA300TCH1516_ALE | 451778 = | 33 (0.290) | intergenic (+77/‑369) | tst_2/USA300HOU_RS02140 | Toxic shock syndrome toxin‑1/hypothetical protein | |||||
Only 100 of 150 total aligned reads displayed.
AAATCGCATGAGTGACGTCATTGACGGTAGAAATATTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTGAGGG > USA300TCH1516_ALE/451638‑451918 | atggcagatgtcatagatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttt > 1:515716‑M2/141‑141 (MQ=255)atggcagatgtcatagatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttt < 1:489507‑M2/1‑1 (MQ=255)atggcagatgtcatagatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttt < 1:933194‑M2/1‑1 (MQ=255) gcagatgtcatagatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcagcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTtgt < 4:131295‑M2/4‑1 (MQ=255) cagatgtcatagatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTtgtg < 3:432878‑M2/5‑1 (MQ=255) cagatgtcatagatggcactaatattgataacattgaagtgaatataaaataatcaggacatgctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTtgtg < 1:306765‑M2/5‑1 (MQ=255) agatgtcatagatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTgtgt > 2:4828‑M2/136‑141 (MQ=255) cATGAGTGACGTCATTGACGGTAGAAATATTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGtt > 1:592246/1‑141 (MQ=255) cATGAGTGACGTCATTGACGGTAGAAATATTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGtt > 1:198296/1‑141 (MQ=255) gtcatagatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGga > 3:447515‑M2/132‑141 (MQ=255) tcatagatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGgag > 1:747349‑M2/131‑141 (MQ=255) gatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATg < 2:894796‑M2/16‑1 (MQ=255) gatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATg < 1:553617‑M2/16‑1 (MQ=255) ttGACGGTAAAAAAAAAAAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAAt < 2:685497/141‑1 (MQ=255) aatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAg < 2:483584‑M2/25‑1 (MQ=255) ttgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTa < 1:41841‑M2/29‑1 (MQ=255) gataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATc > 1:242099‑M2/111‑141 (MQ=255) gataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATc > 4:281331‑M2/111‑141 (MQ=255) atatTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGa > 3:16290/1‑141 (MQ=255) aacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGAt > 2:144161‑M2/108‑141 (MQ=255) acattgaagtaaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATg < 4:441985‑M2/35‑1 (MQ=255) attgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGaa < 3:431938‑M2/37‑1 (MQ=255) gaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGaataa < 1:597985‑M2/40‑1 (MQ=255) gaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGaataa < 1:132712‑M2/40‑1 (MQ=255) aaGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAaca < 1:405637/141‑1 (MQ=255) taaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACAcc > 1:883264‑M2/92‑141 (MQ=255) taaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACAcc < 1:51746‑M2/50‑1 (MQ=255) ccAACATTAGATAATTCAATGAAATATGGAGAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCa > 2:997819/1‑141 (MQ=255) cAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCaa < 3:195128/141‑1 (MQ=255) aataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAAt < 4:207401‑M2/53‑1 (MQ=255) taatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATaa < 1:564051‑M2/55‑1 (MQ=255) aatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTTTTTTGTTGTGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATaaa > 2:1018212‑M2/86‑141 (MQ=255) atcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATaaaa > 3:194102‑M2/85‑141 (MQ=255) aTAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTtg > 2:800387/1‑141 (MQ=255) tctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacgtcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGaaa < 2:922084‑M2/67‑1 (MQ=255) tctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGaaa < 1:1015610‑M2/67‑1 (MQ=255) aaTGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAAt < 1:379467/141‑1 (MQ=255) aTGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTCTTTGTGTTGCAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATa < 4:85891/141‑1 (MQ=255) ctaaatagaagctgtcatcggaaaaacatgaagttatgtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGGGGAAATAg > 2:442571‑M2/72‑141 (MQ=255) ctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAg > 4:63864‑M2/72‑141 (MQ=255) taaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGt < 2:212173‑M2/71‑1 (MQ=255) atatGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGACGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGa < 2:901029/141‑1 (MQ=255) atagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGa > 2:1025855‑M2/68‑141 (MQ=255) atagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGa < 2:576884‑M2/74‑1 (MQ=255) atGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATa < 2:198296/141‑1 (MQ=255) agaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATa > 2:351522‑M2/66‑141 (MQ=255) aagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACt > 2:547826‑M2/64‑141 (MQ=255) aagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACt > 2:594013‑M2/64‑141 (MQ=255) gATAATAGTAAAATATGGATAGTATACAGGAATTAGTCAAGATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACATGTGGAAATATTTGATACtt > 2:311793/1‑141 (MQ=255) agctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACtt > 1:192472‑M2/63‑141 (MQ=255) gctgtcatcggaaacacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGGATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTta > 3:253817‑M2/62‑141 (MQ=255) gctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTta > 2:78440‑M2/62‑141 (MQ=255) ataataGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATACAACTTGTGGAAATAGTTGATACTta < 2:889019/141‑1 (MQ=255) gtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAg < 3:107390‑M2/83‑1 (MQ=255) tcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGt < 1:325822‑M2/84‑1 (MQ=255) gTAAAAGGTGGTTGGTATAGAGTAGGTAGGCAACATAATTTGCTTAGCTTCTTTTTTGTGTTGGAGAGAGGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTcg < 2:678485/141‑1 (MQ=255) atcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTcg < 4:256113‑M2/86‑1 (MQ=255) gaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTcgcgcg < 1:1039042‑M2/90‑1 (MQ=255) aaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGt < 3:291820‑M2/91‑1 (MQ=255) aaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGtt < 1:386386‑M2/92‑1 (MQ=255) aaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTtgt < 2:693368‑M2/62‑1 (MQ=255) aaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTtgt > 1:693368‑M2/49‑110 (MQ=255) aaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTg < 3:399480‑M2/93‑1 (MQ=255) aaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTg > 1:705361‑M2/49‑141 (MQ=255) aacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGt < 2:901266‑M2/94‑1 (MQ=255) aacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGt > 3:137709‑M2/48‑141 (MQ=255) acaagaagttaagtgacaacggcctacctgttgcttagctccttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTc > 4:40307‑M2/47‑141 (MQ=255) aagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCt < 1:86233‑M2/97‑1 (MQ=255) aagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCt < 2:747349‑M2/97‑1 (MQ=255) tAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCtt < 3:120305/141‑1 (MQ=255) agaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCtt < 2:169922‑M2/98‑1 (MQ=255) gaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTTGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCttt > 4:80222‑M2/43‑141 (MQ=255) gttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCg < 1:144161‑M2/102‑1 (MQ=255) aagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGa < 2:647746‑M2/105‑1 (MQ=255) gtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACa > 4:416378‑M2/35‑141 (MQ=255) ggagTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACa > 1:928089/1‑141 (MQ=255) ggagTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACa > 1:886874/1‑141 (MQ=255) gTTAGGCTACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGa < 2:397667/141‑1 (MQ=255) gTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGa > 2:747478/1‑141 (MQ=255) acaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAAGAAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGa < 2:9341‑M2/110‑1 (MQ=255) ttAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGaa > 1:947921/1‑141 (MQ=255) caacagcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGaa > 2:301485‑M2/31‑141 (MQ=255) gcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAAt > 1:1025828‑M2/26‑141 (MQ=255) cctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAATCGCGCGATGTCCTTTTCGTGACATGACACAAtg > 4:344968‑M2/25‑141 (MQ=255) cATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAAtgtg > 4:216494/1‑141 (MQ=255) cATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAAtgtg < 1:848306/141‑1 (MQ=255) gcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACAt < 2:592246‑M2/127‑1 (MQ=255) ttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATATTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAg > 3:357512‑M2/13‑141 (MQ=255) ttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAg < 3:99888‑M2/129‑1 (MQ=255) ttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAg < 1:77904‑M2/129‑1 (MQ=255) tggcttcttttTTGTGTTGGGGAGATGAAAATGAAGCGTATCGATGAATAATAATGACACTAATAAGCCTTGTGGAAATAGTTGATTCTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAATCATAGt < 2:794837‑M2/130‑1 (MQ=255) tagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGt < 1:4828‑M2/130‑1 (MQ=255) agcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGtt > 4:154296‑M2/11‑141 (MQ=255) tcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAAt < 1:2255‑M2/135‑1 (MQ=255) ttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTg > 1:1010250‑M2/5‑141 (MQ=255) ttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTg > 4:122667‑M2/5‑141 (MQ=255) tttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTGa > 3:123088‑M2/4‑141 (MQ=255) tttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTGa > 4:169619‑M2/4‑141 (MQ=255) ttGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAGCTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTGAggg < 4:324669/141‑1 (MQ=255) ttGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTGAggg < 2:759610/141‑1 (MQ=255) | AAATCGCATGAGTGACGTCATTGACGGTAGAAATATTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTGAGGG > USA300TCH1516_ALE/451638‑451918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |