| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2660570 = | 106 (1.170) | 3 (0.040) | 3/236 | NT | 3.0% | intergenic (+12/+237) | ldhD_1/ybiV | D‑lactate dehydrogenase/Sugar phosphatase YbiV |
| ? | USA300TCH1516_ALE | 2660603 = | 96 (1.170) | intergenic (+45/+204) | ldhD_1/ybiV | D‑lactate dehydrogenase/Sugar phosphatase YbiV | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2660720‑2660570‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctttgcttttTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCGT > USA300TCH1516_ALE/2660603‑2660742 ataTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGC < 1:95652/138‑1ATCTCAAACTGGTTAGGCAATAATGCCAGAGTAAAATAAGCGCACTAACATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGC < 1:1054404/141‑1ATCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGACTAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGC < 1:916181/141‑1ATCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGC < 1:180858/141‑1 taTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCC < 2:596278/139‑1 CAAACAGGTTAGGCAATAATGCTATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATCTACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTT < 1:765734/141‑1 CAAACAGGTCAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATGTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTT < 1:615457/141‑1 AACAGGTTAGGCAATAATGCGATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAATAGCAAAGGCACATGGCGCGCCTTTGC > 1:667552/1‑141 ACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTGCT < 2:769726/141‑1 AGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGGGCCTTTGCTTT > 1:1019007/1‑141 AGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTT > 2:261846/1‑141 AGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTT < 2:530972/141‑1 TGCCATAGTAAAATAAGCGCAGTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTGTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATC < 2:1004366/141‑1 AATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTA < 1:756529/141‑1 AAGGCACATGGCGCGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGA > 2:628337/1‑141 GCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATT < 2:996609/141‑1 CTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTG < 2:279276/141‑1 TTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGA < 2:614823/141‑1 TTTGATTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAACCCGCTTTATTTCATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGA < 1:997536/141‑1 TTTTTATTTTGTATAACAGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTAGTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATT < 1:877274/141‑1 TTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCGT > 1:426715/1‑141 ATCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2660720‑2660570‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctttgcttttTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCGT > USA300TCH1516_ALE/2660603‑2660742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |