| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1822717 = | 59 (0.760) | 3 (0.040) | 3/238 | NT | 5.6% | intergenic (+38/+208) | USA300HOU_RS09070/ackA | Putative universal stress protein/Acetate kinase |
| ? | USA300TCH1516_ALE | 1822745 = | 48 (0.680) | intergenic (+66/+180) | USA300HOU_RS09070/ackA | Putative universal stress protein/Acetate kinase | |||||
TTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAGAAAGTTGCACTTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1822866‑1822717‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcacttggttTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACA > USA300TCH1516_ALE/1822745‑1822882 TTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACCATAAAAAATTAAGTGCAGAAAGTTG < 1:471406/141‑1TTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAGAAAGTTG < 1:403308/141‑1 TTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAGAAAGTTGC < 1:766724/141‑1 TTTTGAATTTTTTGAAAATTAACGAGTGTAGTGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGAGTATTAAAACATTATTAAGTGAGTTTTAATAATAAAAAATAAAAATCAAAGAGCAGAAAGTTGC < 2:306788/141‑1 TTGTATTGTTTGAAAATTAATTAGTGTACTGTCTCTTTTCACGAATATCTTAAATAATTAAGTAGTCGAAGAAGATTATCAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAGAAAGTTGCAC > 1:609616/1‑141 TTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAGAAAGTTGCAC < 2:249334/141‑1 TGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAGAAAGTTGCACTTGGTT > 1:32010/1‑141 ACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTAT < 1:917722/141‑1 GTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTC > 2:821979/1‑141 GTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAAAATTATTAAGTGAGTTTTATTTATAAATAATAAAAAACCAAGTGCAGAAAGTGGAACTGGGTTTTTTATTGTTTCTAAATAAAACTa > 1:821979/1‑140 AAAGTTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCG > 1:301555/1‑141 TGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTAC < 2:147554/141‑1 TGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTAC < 1:751905/141‑1 GCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTCAATAATGTTTTCATAATCTTCTTCGACTACTTAATCCTTTAAGATATTCGTGAAACGAGACACTACACTAGTTAATCTCCAAACAATACAAAAAGCGCCTACC > 2:900826/1‑141 GCACTTGGTTTTTTATTGTTTATAAATAAAACTCAATTAATAATGTTTTCATAATCTTCTTCTACTACTTAATTCTTTAAGATATTCGTGAGAAGAGACATTACACTAGTTAATTTTCAAACATTACAAAACGCGCCAACC > 2:133106/1‑141 TGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTA < 1:54303/141‑1 GTTTTTTATTGTTTATAAATAAAACCCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACA < 2:590617/141‑1 TTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAGAAAGTTGCACTTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1822866‑1822717‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcacttggttTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACA > USA300TCH1516_ALE/1822745‑1822882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |