New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1822717 =	59 (0.760)	3 (0.040)	3/238	NT	5.6%	intergenic (+38/+208)	USA300HOU_RS09070/ackA	Putative universal stress protein/Acetate kinase
	?	USA300TCH1516_ALE	1822745 =	48 (0.680)					intergenic (+66/+180)	USA300HOU_RS09070/ackA	Putative universal stress protein/Acetate kinase

ATGCGCCATGTGACGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACA  >  USA300TCH1516_ALE/1822579‑1822857                                                                                                                                           |                                                                                                                                             tgtaggaggtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgggttttatttataaacaataaaaAAc                                                                                                                                            <  2:590617‑M1/3‑1 (MQ=255) aTGCGCCATGTGACGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAAc                                                                                                                                            >  2:325296/1‑141 (MQ=255)   taggaggtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaAACCa                                                                                                                                          <  1:54303‑M1/5‑1 (MQ=255)   gcgcCATGTGACGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAACATTAAATATAGATGATCCTTAGATAACTACTTGCACATTACGAACCa                                                                                                                                          >  2:32010/1‑141 (MQ=255)      ccATGTGACGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAgg                                                                                                                                       >  1:152008/1‑140 (MQ=255)        ggttggcgcgttttgtaatgtttgaaaattaactagtgtaatgtctcttctcacgaatatcttaaagaattaagtagtagaagaagattatgaaaacattattaattgagttttatttataaacaataaaaAACCAAGTGc                                                                                                                                     >  2:133106‑M1/132‑141 (MQ=255)        ggtaggcgctttttgtattgtttggagattaactagtgtagtgtctcgtttcacgaatatcttaaaggattaagtagtcgaagaagattatgaaaacattattgagtgagttttatttataaacaataaaaAACCAAGTGc                                                                                                                                     >  2:900826‑M1/132‑141 (MQ=255)        aTGTGACGTGTTAGTGGTTCGTACTGAAGAGTTACCAGCAGACTTACAACCACATGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGc                                                                                                                                     <  1:789271/141‑1 (MQ=255)         gtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaAACCAAGTGCa                                                                                                                                    <  2:147554‑M1/11‑1 (MQ=255)         gtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaAACCAAGTGCa                                                                                                                                    <  1:751905‑M1/11‑1 (MQ=255)              cgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaAACCAAGTGCAACttt                                                                                                                               >  1:301555‑M1/126‑141 (MQ=255)              cctgtTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCagaaag                                                                                                                               <  1:861848/139‑6 (MQ=255)              cGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAGCTACTTGATCATTATGAACCAAGTGCagaaag                                                                                                                               <  1:559753/141‑6 (MQ=255)              cGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCagaaag                                                                                                                               <  1:353653/141‑6 (MQ=255)              cGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACttt                                                                                                                               <  2:139911/141‑1 (MQ=255)                ggtTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCt                                                                                                                             <  2:93663/140‑1 (MQ=255)                 gtTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTg                                                                                                                            <  2:563241/141‑1 (MQ=255)                    atatgttCGTACTGAATAGCTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCAc                                                                                                                         <  2:699930/138‑1 (MQ=255)                    aGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTACAACTACCTGATCATTAGACTGCCACTGGATCATTATGAACCAAGTGCAACTTTCTGCAc                                                                                                                         <  1:222244/141‑1 (MQ=255)                    aGTTGTTCGAACAGAAGAGTTACCAGCACACTACCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCAc                                                                                                                         <  2:308371/141‑1 (MQ=255)                            gTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGtttt                                                                                                                 >  2:808929/1‑141 (MQ=255)                              aCTGAATAGTGACCAGCAGATTTTCAACTACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGtttttt                                                                                                               <  2:30033/141‑1 (MQ=255)                               cTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGCTAATTTGAGGACTACGTGATCATTATGAGCCAAGTGCAACTTTCTGCACTTGGttttttt                                                                                                              >  1:178196/1‑140 (MQ=255)                               cTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGtgttttt                                                                                                              >  1:707642/1‑140 (MQ=255)                               cTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTa                                                                                                              >  1:764306/1‑141 (MQ=255)                                  aaGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTAttt                                                                                                           >  2:353382/1‑140 (MQ=255)                                         aCCAGCAGACTTACAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTataa                                                                                                    <  2:157652/141‑1 (MQ=255)                                          ccAGCAGACGTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTataaa                                                                                                   <  1:465600/141‑1 (MQ=255)                                               agACTACCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATaaaa                                                                                              <  2:599191/141‑1 (MQ=255)                                                gACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAAc                                                                                             >  2:40075/1‑141 (MQ=255)                                                aaCTTCCAACCAAAAGTTGCAACAATTTAATTACGTTAAAAATATCAAAATTAAATATAGATGATCATTAGTTAACTACTTGACCATTATGAACCAAGTGCAACTTTCTGCACTTGGTGTTTTATTGTTTATAAAGAAAAc                                                                                             <  2:780901/140‑1 (MQ=255)                                                 aCTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACt                                                                                            <  1:393283/141‑1 (MQ=255)                                                   ttCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGAGCATTAGATAGCTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATATATAAAACTcc                                                                                          <  2:163950/141‑2 (MQ=255)                                                        aCCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTtaa                                                                                     >  1:478549/1‑141 (MQ=255)                                                         ccACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTTCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTtaat                                                                                    <  1:577276/141‑1 (MQ=255)                                                         ccACAAGTTGCAACAACTCAATTACGTGAAAAATATAAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTtaat                                                                                    >  2:924821/1‑141 (MQ=255)                                                         ccACAAATAGCAACGGCACAATTACGTAAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTTCAACTTTCTGCGTTTGTTTTTTTATTGTTTATAACTTAAACTTACTtaaa                                                                                    >  2:86259/1‑140 (MQ=255)                                                         agacaAGTAGCAACAACTGGATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAGGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTtaat                                                                                    >  2:86117/3‑141 (MQ=255)                                                            caAGTAGTAACAACTAAATTACGTTAAAAATATAAAAATTAAATTTCGCTGATCATTAGATAACTACTTGATCATTATGAAACAAGTGCAACTTTCTGCACTTGGTTTTTTAGTGTTTATAAATAAAACTCACTTaataat                                                                                 <  1:923835/141‑1 (MQ=255)                                                            aaaGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTaataat                                                                                 <  2:768173/140‑1 (MQ=255)                                                                       aacTCAATTACGTTAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTATGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAAt                                                                      <  2:54545/141‑1 (MQ=255)                                                                                 cGTAAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGac                                                            <  1:900775/141‑1 (MQ=255)                                                                                  gTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGact                                                           >  2:505931/1‑141 (MQ=255)                                                                                  gTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGact                                                           <  2:766693/141‑1 (MQ=255)                                                                                     aaaaaTATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGactact                                                        <  2:478549/141‑1 (MQ=255)                                                                                      aaaaTATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTCATAATGTTTTCATAATCTTCTTAGACTACtt                                                       >  2:431711/1‑141 (MQ=255)                                                                                          tatCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGCTTTCATAATCTTCTTCGACTACTTAAtt                                                   >  1:655156/1‑141 (MQ=255)                                                                                            tCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCt                                                 >  2:490972/1‑141 (MQ=255)                                                                                                aaTTAAACAGAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTaa                                             <  2:175792/141‑1 (MQ=255)                                                                                                  ttAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGa                                           <  2:336244/141‑1 (MQ=255)                                                                                                     aaTATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGatat                                        >  2:35212/1‑141 (MQ=255)                                                                                                      atatAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGAGAtt                                       >  1:650234/1‑141 (MQ=255)                                                                                                         tcgatgatCATTAGATAACTACTTGATCATTATGAATCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCGTAATCTTCTTCGACTACTTAATTATTTAAGATATTCGt                                    <  1:524500/139‑1 (MQ=255)                                                                                                         taGATGATCATTAGATAACTACTTGATCATTATGAACCTAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGt                                    <  1:613511/141‑1 (MQ=255)                                                                                                                 cATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAagag                            <  2:655156/141‑1 (MQ=255)                                                                                                                   tagttttatttagaaacaataaaaAACCCAGTTCCACTTTCTGCACTTGGTTTTTTATTATTTATAAATAAAACTCACTTAATAATTTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGAc                          >  1:821979‑M1/25‑141 (MQ=255)                                                                                                                   gagttttatttataaacaataaaaAACCAAGTGCAGAAAGTTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGAc                          >  2:821979‑M1/25‑141 (MQ=255)                                                                                                                    tAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGCCa                         >  2:659440/1‑141 (MQ=255)                                                                                                                      gATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACAtt                       <  1:939517/141‑1 (MQ=255)                                                                                                                      gATAACTACTGTTTCATTATGAACCAAGTGCAACTTTCTGCACTTGGCTGCTTGTTTTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACAtt                       <  1:358218/141‑1 (MQ=255)                                                                                                                       aTAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTa                      >  2:163890/1‑141 (MQ=255)                                                                                                                        tAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTac                     >  1:480071/1‑141 (MQ=255)                                                                                                                         aaCTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAACTAAAACTCACTTAATAATGTTTTCCTAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGACAAGACCCATTacc                    >  2:409524/1‑140 (MQ=255)                                                                                                                            tactTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTa                 <  1:274481/141‑1 (MQ=255)                                                                                                                              ataaacaataaaaAACCAAGTGCAGAAAGTTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGt               <  1:917722‑M1/128‑1 (MQ=255)                                                                                                                               ttGATAATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGtt              <  2:304511/141‑1 (MQ=255)                                                                                                                               tggattgttATGAGCCNAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCGCTTACTAATGTCTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGtt              <  1:861153/134‑1 (MQ=255)                                                                                                                                tGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTa             <  1:881786/141‑1 (MQ=255)                                                                                                                                  aTCATTATGGACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTGTAAATAAATCTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTTAAAAGAGACATTACACTAGTTAAt           >  2:430346/1‑141 (MQ=255)                                                                                                                                  aTCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAATAGACATTACACTAGTTAAt           >  2:934592/1‑141 (MQ=255)                                                                                                                                  aTCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAAt           >  1:907953/1‑141 (MQ=255)                                                                                                                                   tgatgaTGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAGGATATTCGTGAAAAGAGACATTACACTAGTTAAtt          >  2:244806/6‑141 (MQ=255)                                                                                                                                   tCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAAtt          <  1:102326/141‑1 (MQ=255)                                                                                                                                        aTGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAGTGTTTTCATAGGCTTCTTCGACTGCTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTACTTTTCaa     >  2:568/1‑141 (MQ=255)                                                                                                                                        aTGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCaa     >  2:898446/1‑141 (MQ=255)                                                                                                                                          gAACCAAGTGCAACTTTCTTCACTTGGTTTTTTATTGTTTATAATTAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAAc   <  1:332188/141‑1 (MQ=255)                                                                                                                                           AACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACa  >  1:32010‑M1/1‑141 (MQ=255)                                                                                                                                           |                                                                                                                                             ATGCGCCATGTGACGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACA  >  USA300TCH1516_ALE/1822579‑1822857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.