New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1822717 =	59 (0.760)	3 (0.040)	3/238	NT	5.6%	intergenic (+38/+208)	USA300HOU_RS09070/ackA	Putative universal stress protein/Acetate kinase
	?	USA300TCH1516_ALE	1822745 =	48 (0.680)					intergenic (+66/+180)	USA300HOU_RS09070/ackA	Putative universal stress protein/Acetate kinase

GTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATAT  >  USA300TCH1516_ALE/1822606‑1822885                                                                                                                                            |                                                                                                                                             gTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGtttt                                                                                                                                             >  2:808929/1‑141 (MQ=255)   aCTGAATAGTGACCAGCAGATTTTCAACTACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGtttttt                                                                                                                                           <  2:30033/141‑1 (MQ=255)    cTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGCTAATTTGAGGACTACGTGATCATTATGAGCCAAGTGCAACTTTCTGCACTTGGttttttt                                                                                                                                          >  1:178196/1‑140 (MQ=255)    cTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGtgttttt                                                                                                                                          >  1:707642/1‑140 (MQ=255)    cTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTa                                                                                                                                          >  1:764306/1‑141 (MQ=255)       aaGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTAttt                                                                                                                                       >  2:353382/1‑140 (MQ=255)            actagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaaaccaagtgcaactttctgcacttggttTTTTATTGTTtat                                                                                                                                  <  1:917722‑M2/13‑1 (MQ=255)              aCCAGCAGACTTACAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTataa                                                                                                                                <  2:157652/141‑1 (MQ=255)               ccAGCAGACGTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTataaa                                                                                                                               <  1:465600/141‑1 (MQ=255)                    agACTACCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATaaaa                                                                                                                          <  2:599191/141‑1 (MQ=255)                     gACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAAc                                                                                                                         >  2:40075/1‑141 (MQ=255)                     aaCTTCCAACCAAAAGTTGCAACAATTTAATTACGTTAAAAATATCAAAATTAAATATAGATGATCATTAGTTAACTACTTGACCATTATGAACCAAGTGCAACTTTCTGCACTTGGTGTTTTATTGTTTATAAAGAAAAc                                                                                                                         <  2:780901/140‑1 (MQ=255)                      aCTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACt                                                                                                                        <  1:393283/141‑1 (MQ=255)                       gtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaaaccaagtgcaactttctgcacttggttTTTTATTGTTTATAAATAAAACTc                                                                                                                       >  2:821979‑M2/118‑141 (MQ=255)                       gtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaaaattattaagtgagttttatttataaataataaaaaaccaagtgcagaaagtggaactgggttTTTTATTGTTTCTAAATAAAActa                                                                                                                       >  1:821979‑M2/118‑140 (MQ=255)                        ttCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGAGCATTAGATAGCTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATATATAAAACTcc                                                                                                                      <  2:163950/141‑2 (MQ=255)                             aCCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTtaa                                                                                                                 >  1:478549/1‑141 (MQ=255)                              ccACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTTCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTtaat                                                                                                                <  1:577276/141‑1 (MQ=255)                              ccACAAGTTGCAACAACTCAATTACGTGAAAAATATAAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTtaat                                                                                                                >  2:924821/1‑141 (MQ=255)                              ccACAAATAGCAACGGCACAATTACGTAAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTTCAACTTTCTGCGTTTGTTTTTTTATTGTTTATAACTTAAACTTACTtaaa                                                                                                                >  2:86259/1‑140 (MQ=255)                              agacaAGTAGCAACAACTGGATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAGGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTtaat                                                                                                                >  2:86117/3‑141 (MQ=255)                                 caAGTAGTAACAACTAAATTACGTTAAAAATATAAAAATTAAATTTCGCTGATCATTAGATAACTACTTGATCATTATGAAACAAGTGCAACTTTCTGCACTTGGTTTTTTAGTGTTTATAAATAAAACTCACTTaataat                                                                                                             <  1:923835/141‑1 (MQ=255)                                 aaaGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTaataat                                                                                                             <  2:768173/140‑1 (MQ=255)                                            aacTCAATTACGTTAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTATGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAAt                                                                                                  <  2:54545/141‑1 (MQ=255)                                                      cGTAAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGac                                                                                        <  1:900775/141‑1 (MQ=255)                                                       gTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGact                                                                                       >  2:505931/1‑141 (MQ=255)                                                       gTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGact                                                                                       <  2:766693/141‑1 (MQ=255)                                                          aaaaaTATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGactact                                                                                    <  2:478549/141‑1 (MQ=255)                                                           aaaaTATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTCATAATGTTTTCATAATCTTCTTAGACTACtt                                                                                   >  2:431711/1‑141 (MQ=255)                                                               tatCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGCTTTCATAATCTTCTTCGACTACTTAAtt                                                                               >  1:655156/1‑141 (MQ=255)                                                                 tCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCt                                                                             >  2:490972/1‑141 (MQ=255)                                                                     aaTTAAACAGAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTaa                                                                         <  2:175792/141‑1 (MQ=255)                                                                       ttAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGa                                                                       <  2:336244/141‑1 (MQ=255)                                                                          aaTATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGatat                                                                    >  2:35212/1‑141 (MQ=255)                                                                           atatAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGAGAtt                                                                   >  1:650234/1‑141 (MQ=255)                                                                              tcgatgatCATTAGATAACTACTTGATCATTATGAATCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCGTAATCTTCTTCGACTACTTAATTATTTAAGATATTCGt                                                                <  1:524500/139‑1 (MQ=255)                                                                              taGATGATCATTAGATAACTACTTGATCATTATGAACCTAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGt                                                                <  1:613511/141‑1 (MQ=255)                                                                                      cATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAagag                                                        <  2:655156/141‑1 (MQ=255)                                                                                        tagttttatttagaaacaataaaaAACCCAGTTCCACTTTCTGCACTTGGTTTTTTATTATTTATAAATAAAACTCACTTAATAATTTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGAc                                                      >  1:821979‑M1/25‑141 (MQ=255)                                                                                        gagttttatttataaacaataaaaAACCAAGTGCAGAAAGTTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGAc                                                      >  2:821979‑M1/25‑141 (MQ=255)                                                                                         tAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGCCa                                                     >  2:659440/1‑141 (MQ=255)                                                                                           gATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACAtt                                                   <  1:939517/141‑1 (MQ=255)                                                                                           gATAACTACTGTTTCATTATGAACCAAGTGCAACTTTCTGCACTTGGCTGCTTGTTTTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACAtt                                                   <  1:358218/141‑1 (MQ=255)                                                                                            aTAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTa                                                  >  2:163890/1‑141 (MQ=255)                                                                                             tAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTac                                                 >  1:480071/1‑141 (MQ=255)                                                                                              aaCTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAACTAAAACTCACTTAATAATGTTTTCCTAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGACAAGACCCATTacc                                                >  2:409524/1‑140 (MQ=255)                                                                                                 tactTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTa                                             <  1:274481/141‑1 (MQ=255)                                                                                                   ataaacaataaaaAACCAAGTGCAGAAAGTTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGt                                           <  1:917722‑M1/128‑1 (MQ=255)                                                                                                    ttGATAATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGtt                                          <  2:304511/141‑1 (MQ=255)                                                                                                    tggattgttATGAGCCNAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCGCTTACTAATGTCTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGtt                                          <  1:861153/134‑1 (MQ=255)                                                                                                     tGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTa                                         <  1:881786/141‑1 (MQ=255)                                                                                                       aTCATTATGGACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTGTAAATAAATCTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTTAAAAGAGACATTACACTAGTTAAt                                       >  2:430346/1‑141 (MQ=255)                                                                                                       aTCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAATAGACATTACACTAGTTAAt                                       >  2:934592/1‑141 (MQ=255)                                                                                                       aTCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAAt                                       >  1:907953/1‑141 (MQ=255)                                                                                                        tgatgaTGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAGGATATTCGTGAAAAGAGACATTACACTAGTTAAtt                                      >  2:244806/6‑141 (MQ=255)                                                                                                        tCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAAtt                                      <  1:102326/141‑1 (MQ=255)                                                                                                             aTGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAGTGTTTTCATAGGCTTCTTCGACTGCTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTACTTTTCaa                                 >  2:568/1‑141 (MQ=255)                                                                                                             aTGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCaa                                 >  2:898446/1‑141 (MQ=255)                                                                                                               gAACCAAGTGCAACTTTCTTCACTTGGTTTTTTATTGTTTATAATTAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAAc                               <  1:332188/141‑1 (MQ=255)                                                                                                                AACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACa                              >  1:32010‑M1/1‑141 (MQ=255)                                                                                                                      GTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTGATAATCTTCTTCGACTACTTAATTATTTAAGATATTCGTGAAAAGAGACAGTACACTAATTAATTTTCAAACAATACaa                        >  1:609616‑M1/1‑141 (MQ=255)                                                                                                                      GTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACaa                        <  2:249334‑M1/141‑1 (MQ=255)                                                                                                                        GCAACTTTCTGCTCTTTGATTTTTATTTTTTATTATTAAAACTCACTTAATAATGTTTTAATACTCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACACTACACTCGTTAATTTTCAAAAAATTCaaaa                      <  2:306788‑M1/141‑1 (MQ=255)                                                                                                                        GCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACaaaa                      <  1:766724‑M1/141‑1 (MQ=255)                                                                                                                         CAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACaaaaa                     <  1:403308‑M1/141‑1 (MQ=255)                                                                                                                         CAACTTTCTGCACTTAATTTTTTATGGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACaaaaa                     <  1:471406‑M1/141‑1 (MQ=255)                                                                                                                            cTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCg                  <  1:894778/141‑1 (MQ=255)                                                                                                                            aaagttgcacttggttTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCg                  >  1:301555‑M2/17‑141 (MQ=255)                                                                                                                             tttCTGCACTTGGTTTTTTATAGTTTATAAATAAAACTCACTTAATAATGTTTTCATAACCTTCTTCGACTACTTAATCCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGt                 <  1:669160/141‑1 (MQ=255)                                                                                                                                 tgcacttggttTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTAc             <  2:147554‑M2/130‑1 (MQ=255)                                                                                                                                 tgcacttggttTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTAc             <  1:751905‑M2/130‑1 (MQ=255)                                                                                                                                  gcacttggttTTTTATTGTTTATAAATAAAACTCACTCAATAATGTTTTCATAATCTTCTTCGACTACTTAATCCTTTAAGATATTCGTGAAACGAGACACTACACTAGTTAATCTCCAAACAATACAAAAAGCGCCTAcc            >  2:900826‑M2/11‑141 (MQ=255)                                                                                                                                  gcacttggttTTTTATTGTTTATAAATAAAACTCAATTAATAATGTTTTCATAATCTTCTTCTACTACTTAATTCTTTAAGATATTCGTGAGAAGAGACATTACACTAGTTAATTTTCAAACATTACAAAACGCGCCAAcc            >  2:133106‑M2/11‑141 (MQ=255)                                                                                                                                       tggttTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTa       <  1:54303‑M2/136‑1 (MQ=255)                                                                                                                                         gttTTTTATTGTTTATAAATAAAACCCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACa     <  2:590617‑M2/138‑1 (MQ=255)                                                                                                                                            ttttATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACatat  >  1:131777/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                             GTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATAT  >  USA300TCH1516_ALE/1822606‑1822885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.