| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 739800 | 74 (0.830) | 6 (0.070) | 3/252 | 10.8 | 7.6% | intergenic (+27/+561) | pitA_1/sle1_2 | Low‑affinity inorganic phosphate transporter 1/N‑acetylmuramoyl‑L‑alanine amidase sle1 |
| ? | USA300TCH1516_ALE | = 739823 | 79 (0.980) | intergenic (+50/+538) | pitA_1/sle1_2 | Low‑affinity inorganic phosphate transporter 1/N‑acetylmuramoyl‑L‑alanine amidase sle1 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCGAGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/739652‑739800‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaactgaacttcaATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACCTGCTAACAATGCTGAAATAGGTAATGTAATCACCCATGTAATGATCATTCGTT < USA300TCH1516_ALE/739823‑739685 tCCGGGCTAAAGCGGGAAGATGGAGCATTGCGCCACGAATGATGATTACATGGGTGATTACATTACCTATTTCAGCATTTTTAGCAGGTTTACTATTCTATACACTTATTTTATTTTTCTAATTTAAAATAAAACTAAAC < 2:724671/139‑1ACCGAGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTTAAAATAAAACTAAAC < 1:747852/140‑1 CCGAGCTAAAGGTGTAAAGTGGAGCACTGCGCAACGAATGATTATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACT < 2:468301/140‑1 AGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAA > 2:831613/1‑140 CTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACT < 2:442743/140‑1 AATTATCATCACATGGTTGATTACATTATCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAG < 2:322771/140‑1 AATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAG < 2:923405/140‑1 AATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTACTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAG < 2:394602/140‑1 AATGATCATTAAATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAG < 1:732443/140‑1 TTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGTGATAC < 1:168022/110‑1 TTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACCATATGTTTGTGATAC > 2:168022/1‑110 AACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACCTGCTAACAATGCTGAAATAGGTAATGTAATCACCAATGTAATGATCA > 1:358994/1‑140 CTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACCTGATAAAAATGCTCAAATGGGTAATGTAATCACCCATGTAATAATCATT > 2:207997/1‑140 CAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACCTGCTAACAATGCTGAAATAGGTAATGTAATCACCCATGTAATGATCATTCGT < 1:318644/140‑1 AATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACCTGCTAACAATGATGAAATAGGTAATGTAATCACCCCTGTAATGATCACTCGTT > 2:792094/1‑140 ACCGAGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/739652‑739800‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaactgaacttcaATACCACCATATGTTTGTGATACTGAAGTTCAGTTTAGTTTTATTTTCAATTAGAAAAATAAGTTAAGTATATAGAATAGTAAACCTGCTAACAATGCTGAAATAGGTAATGTAATCACCCATGTAATGATCATTCGTT < USA300TCH1516_ALE/739823‑739685 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |