New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 739800	74 (0.830)	6 (0.070)	3/252	10.8	7.6%	intergenic (+27/+561)	pitA_1/sle1_2	Low‑affinity inorganic phosphate transporter 1/N‑acetylmuramoyl‑L‑alanine amidase sle1
	?	USA300TCH1516_ALE	= 739823	79 (0.980)					intergenic (+50/+538)	pitA_1/sle1_2	Low‑affinity inorganic phosphate transporter 1/N‑acetylmuramoyl‑L‑alanine amidase sle1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAAC  >  USA300TCH1516_ALE/739662‑739935                                                                                                                                            |                                                                                                                                        aGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑Ag                                                                                                                                        <  1:942745/140‑1 (MQ=255)   gtgtAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTa                                                                                                                                      >  2:877968/1‑140 (MQ=255)   gggtAAAATGGAGCAGTGCGGAACGAATGATCATTACATGGGTGATTACATTACCCATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTa                                                                                                                                      <  2:793876/138‑1 (MQ=255)          aTGGAGCACCGCCCAACGAATGATCATTACACTGGCGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACaaa                                                                                                                               <  1:54962/140‑1 (MQ=255)            ggAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACa                                                                                                                             <  1:895443/140‑1 (MQ=255)             gAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACat                                                                                                                            <  2:905885/140‑1 (MQ=255)                 aCTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATAtgg                                                                                                                        >  1:329013/1‑140 (MQ=255)                    gcgcAACGAATGATCATTACATGGATGATTACATTACCAATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATAtggtgg                                                                                                                     >  1:644677/1‑140 (MQ=255)                        aaCGAGTGATCATTACAGGGGTGATTACATTACCTATTTCATCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTAtt                                                                                                                 <  2:792094/140‑1 (MQ=255)                         aCGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTg                                                                                                                >  1:318644/1‑140 (MQ=255)                            aaTGATTATTACATGGGTGATTACATTACCCATTTGAGCATTTTTATCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAg                                                                                                             <  2:207997/140‑1 (MQ=255)                              tGATCATTACATTGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGtt                                                                                                           <  1:358994/140‑1 (MQ=255)                                     tACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGtttt                                                                                                    >  1:781601/1‑140 (MQ=255)                                       cATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGtttttt                                                                                                  <  1:221714/140‑1 (MQ=255)                                        aTGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTa                                                                                                 >  2:630668/1‑140 (MQ=255)                                            gTGATTACATTACCTATTTCAGCATTATTAGTATGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAACCTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTa                                                                                             <  1:533130/140‑1 (MQ=255)                                              gATTACATTACTTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAg                                                                                           <  2:64695/140‑1 (MQ=255)                                               attacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGt                                                                                          <  1:97829/140‑1 (MQ=255)                                                 tacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAg                                                                                        <  2:856751/140‑1 (MQ=255)                                                   cattatCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGAt                                                                                      <  2:7166/140‑1 (MQ=255)                                                     ttacCTATTTCAGCATTGTTAGCCGGTTTACTAGTCTATAGACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATaa                                                                                    >  2:586394/1‑140 (MQ=255)                                                             ttCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATAtttt                                                                            >  1:405718/1‑140 (MQ=255)                                                              tCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTTAAAATACAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAATTTCAGTTTTTTATGTAAGTAGATAACATGTTTta                                                                           >  1:689596/1‑140 (MQ=255)                                                              tCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTta                                                                           >  1:518947/1‑140 (MQ=255)                                                               catcATTGTTAGCATGTTTACTATTCTAGATACTTAACCTATTTTTGTCAGTGAAAATAAAACTAAACTGAACTTG‑AGTATCACAAACCTATGGTGGTATTGAAGTCCAGTTTTTTATGTAAGTAGATAACATATTTtat                                                                          <  1:883189/137‑1 (MQ=255)                                                               cAGCATTGTTAGCATGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTtat                                                                          <  1:877968/140‑1 (MQ=255)                                                               aagtaTTGTTAGCAGGTTTACTATTTTATAGACGTAACTTATTTTTCCAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATACGTTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTtat                                                                          <  1:883175/136‑1 (MQ=255)                                                                 gCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAg                                                                        <  1:7892/140‑1 (MQ=255)                                                                 gCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAg                                                                        >  1:372178/1‑140 (MQ=255)                                                                 gCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAg                                                                        <  2:229205/140‑1 (MQ=255)                                                                 gCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAg                                                                        <  2:894754/140‑1 (MQ=255)                                                                 gCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGAGAACATATTTTATAg                                                                        >  1:546279/1‑140 (MQ=255)                                                                 gCAATGTTAGCAGGTTTACTATTCTATATACTTAACTTAATTTTCAAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAg                                                                        <  1:573452/140‑1 (MQ=255)                                                                     tGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAAtt                                                                    >  2:808246/1‑140 (MQ=255)                                                                         aGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACg                                                                >  1:247035/1‑140 (MQ=255)                                                                          gCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAGCTTTATCGATCGTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGt                                                               <  1:476988/140‑1 (MQ=255)                                                                               tttACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAAt                                                          >  1:798359/1‑140 (MQ=255)                                                                               tttACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATAAGGAGGAATAGACGTTCAGTTTTAAATGTAAGTAGATAACATATTGTAAAAAATTAACGTAAAAt                                                          >  2:690347/1‑140 (MQ=255)                                                                               tttACTATTCTATATACTTAAATTATTTTTCTAATTGCCAATAACTCATTAGGTAATGGC‑GGTATGAGAAACATATGGGGGGAATAACGTTGAGTTTTTGATGTAAGTAGATAACATATTTTATAGAATGTACGGAGAAt                                                          >  2:113361/1‑140 (MQ=255)                                                                               tttACTATTCTAAATACTTAACTTATTTTTCTACTAGCGTAATAAACTAAA‑AATACTACAAAGATCACGAAGATATGGTGATATTGAAGTTCAGTTTTTTGTGTAAGTAGATAACATATGTTATAGACTTTACGTAGAAt                                                          >  2:113366/1‑140 (MQ=255)                                                                               gttACTGGTCTAGAGACGTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAAt                                                          >  2:996465/2‑140 (MQ=255)                                                                                   cTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAATTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACTTAGAATGAcc                                                      <  2:515433/140‑1 (MQ=255)                                                                                       tCTATATTCTTAACTTATTTTTCTAATTGAAAATAAACCTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGa                                                  <  2:53246/140‑1 (MQ=255)                                                                                         tatataCTTAACTTAATGTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACa                                                <  2:425131/140‑1 (MQ=255)                                                                                           tataCTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACaaa                                              <  1:366155/140‑1 (MQ=255)                                                                                             taCTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGc                                            >  1:253155/1‑140 (MQ=255)                                                                                               cttaacttaTTTTTCTAATTGAAAATAAAACCAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCAt                                          <  1:297648/140‑1 (MQ=255)                                                                                                 taacgtaTTTTGCAAATTGAAAAAAAAACGAAACTGAGCTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTATATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCAttt                                        <  1:591362/140‑1 (MQ=255)                                                                                                  aacttaTTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAAACAAAGCAtttt                                       >  1:308536/1‑140 (MQ=255)                                                                                                      tttttttCTAATTGAAATTAAAATTTATGAGGTAGTC‑AGTATCACAAACATATGGTGGTATTGAAGGTCAGGTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAAtt                                   <  1:23987/138‑1 (MQ=255)                                                                                                      taTTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAAtt                                   <  2:514595/140‑1 (MQ=255)                                                                                                       aTTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTACGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTa                                  >  1:30373/1‑140 (MQ=255)                                                                                                       aTTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTa                                  >  1:672650/1‑140 (MQ=255)                                                                                                       aTTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTa                                  >  2:167177/1‑140 (MQ=255)                                                                                                       aTTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATACGGTGGTATTGAAGGTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGAACTAGACAAAGCATTTTAAttt                                  >  1:189976/1‑139 (MQ=255)                                                                                                         ttttCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGAATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTagg                                >  1:248930/1‑140 (MQ=255)                                                                                                         ttttCTAATTGAAAAAAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTagg                                >  1:747088/1‑140 (MQ=255)                                                                                                             cTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGAAAAAGGATTTTAATTAGGAGGc                            >  1:41945/1‑140 (MQ=255)                                                                                                              taagttaaaaTAAAACTAAACTGCACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCt                           <  2:703518/134‑1 (MQ=255)                                                                                                              tAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGAAGGCt                           >  1:752085/1‑140 (MQ=255)                                                                                                                    aaaaTAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTAtattt                     >  1:214057/1‑139 (MQ=255)                                                                                                                    aaaaTAAAACTAAACTGAACTTC‑AGTATCACAAACATATGAGGGTATTCAAGTTCAGTTTTATATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTACATTAGGAGGCTAtatta                     >  2:805975/1‑140 (MQ=255)                                                                                                                       aTAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGACGCTCCGGCTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGAAGAATAACCAAGACAAAGCATGTTAATTAGGAGGCTATATTATaa                  >  1:836290/1‑140 (MQ=255)                                                                                                                        tAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGAGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAACCATTTTAATTAGGAGCCTATATGAaaaa                 >  2:199349/1‑140 (MQ=255)                                                                                                                            actaaactGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTa             >  1:841970/1‑140 (MQ=255)                                                                                                                             ctaaactGAACTTC‑AGTATCACAAACATATGGTGGTAATGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTCTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTAt            >  2:749315/1‑140 (MQ=255)                                                                                                                               aaactGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTc          >  2:913536/1‑140 (MQ=255)                                                                                                                                 actGAACTTT‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCa        <  2:821166/140‑1 (MQ=255)                                                                                                                                  ctGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAGACATTTTAATTAGGAGGCTATATTTTAAATGTATTCCAt       >  1:260391/1‑140 (MQ=255)                                                                                                                                  ctGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATAAGACTTCTATATTATCCATGTATTcttt       >  1:472108/1‑137 (MQ=255)                                                                                                                                   tacacgtC‑AGTATCACAAACAGATGGGGGTATTGAAGTTAAGTGTTTTACGTAAGTAGATAACATATTTTATAGAATTTACGTAGAACGACCAAGACAAATCATTTTAATTAGGAGGCTATATTATAAATGTACTCCATg      <  2:50659/134‑1 (MQ=255)                                                                                                                                   tGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATg      <  2:95384/140‑1 (MQ=255)                                                                                                                                      aCTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGaa   >  1:140376/1‑140 (MQ=255)                                                                                                                                       cTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAAc  >  1:467379/1‑140 (MQ=255)                                                                                                                                            |                                                                                                                                        AGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAAC  >  USA300TCH1516_ALE/739662‑739935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.