New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 739800	74 (0.830)	6 (0.070)	3/252	10.8	7.6%	intergenic (+27/+561)	pitA_1/sle1_2	Low‑affinity inorganic phosphate transporter 1/N‑acetylmuramoyl‑L‑alanine amidase sle1
	?	USA300TCH1516_ALE	= 739823	79 (0.980)					intergenic (+50/+538)	pitA_1/sle1_2	Low‑affinity inorganic phosphate transporter 1/N‑acetylmuramoyl‑L‑alanine amidase sle1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAAT  >  USA300TCH1516_ALE/739685‑739958                                                                                                                                            |                                                                                                                                        aaCGAGTGATCATTACAGGGGTGATTACATTACCTATTTCATCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTAtt                                                                                                                                        <  2:792094/140‑1 (MQ=255)  aCGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTg                                                                                                                                       >  1:318644/1‑140 (MQ=255)     aaTGATTATTACATGGGTGATTACATTACCCATTTGAGCATTTTTATCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAg                                                                                                                                    <  2:207997/140‑1 (MQ=255)       tGATCATTACATTGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGtt                                                                                                                                  <  1:358994/140‑1 (MQ=255)              tACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGtttt                                                                                                                           >  1:781601/1‑140 (MQ=255)                cATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGtttttt                                                                                                                         <  1:221714/140‑1 (MQ=255)                 aTGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTa                                                                                                                        >  2:630668/1‑140 (MQ=255)                     gTGATTACATTACCTATTTCAGCATTATTAGTATGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAACCTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTa                                                                                                                    <  1:533130/140‑1 (MQ=255)                       gATTACATTACTTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAg                                                                                                                  <  2:64695/140‑1 (MQ=255)                        attacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGt                                                                                                                 <  1:97829/140‑1 (MQ=255)                          tacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAg                                                                                                               <  2:856751/140‑1 (MQ=255)                            cattatCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGAt                                                                                                             <  2:7166/140‑1 (MQ=255)                              ttacCTATTTCAGCATTGTTAGCCGGTTTACTAGTCTATAGACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATaa                                                                                                           >  2:586394/1‑140 (MQ=255)                                      ttCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATAtttt                                                                                                   >  1:405718/1‑140 (MQ=255)                                       tCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTTAAAATACAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAATTTCAGTTTTTTATGTAAGTAGATAACATGTTTta                                                                                                  >  1:689596/1‑140 (MQ=255)                                       tCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTta                                                                                                  >  1:518947/1‑140 (MQ=255)                                        catcATTGTTAGCATGTTTACTATTCTAGATACTTAACCTATTTTTGTCAGTGAAAATAAAACTAAACTGAACTTG‑AGTATCACAAACCTATGGTGGTATTGAAGTCCAGTTTTTTATGTAAGTAGATAACATATTTtat                                                                                                 <  1:883189/137‑1 (MQ=255)                                        cAGCATTGTTAGCATGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTtat                                                                                                 <  1:877968/140‑1 (MQ=255)                                        aagtaTTGTTAGCAGGTTTACTATTTTATAGACGTAACTTATTTTTCCAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATACGTTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTtat                                                                                                 <  1:883175/136‑1 (MQ=255)                                          gCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAg                                                                                               <  2:229205/140‑1 (MQ=255)                                          gCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAg                                                                                               >  1:372178/1‑140 (MQ=255)                                          gCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAg                                                                                               <  1:7892/140‑1 (MQ=255)                                          gCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAg                                                                                               <  2:894754/140‑1 (MQ=255)                                          gCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGAGAACATATTTTATAg                                                                                               >  1:546279/1‑140 (MQ=255)                                          gCAATGTTAGCAGGTTTACTATTCTATATACTTAACTTAATTTTCAAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAg                                                                                               <  1:573452/140‑1 (MQ=255)                                              tGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAAtt                                                                                           >  2:808246/1‑140 (MQ=255)                                                  aGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACg                                                                                       >  1:247035/1‑140 (MQ=255)                                                   gCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAGCTTTATCGATCGTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGt                                                                                      <  1:476988/140‑1 (MQ=255)                                                        tttACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAAt                                                                                 >  1:798359/1‑140 (MQ=255)                                                        tttACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATAAGGAGGAATAGACGTTCAGTTTTAAATGTAAGTAGATAACATATTGTAAAAAATTAACGTAAAAt                                                                                 >  2:690347/1‑140 (MQ=255)                                                        tttACTATTCTATATACTTAAATTATTTTTCTAATTGCCAATAACTCATTAGGTAATGGC‑GGTATGAGAAACATATGGGGGGAATAACGTTGAGTTTTTGATGTAAGTAGATAACATATTTTATAGAATGTACGGAGAAt                                                                                 >  2:113361/1‑140 (MQ=255)                                                        tttACTATTCTAAATACTTAACTTATTTTTCTACTAGCGTAATAAACTAAA‑AATACTACAAAGATCACGAAGATATGGTGATATTGAAGTTCAGTTTTTTGTGTAAGTAGATAACATATGTTATAGACTTTACGTAGAAt                                                                                 >  2:113366/1‑140 (MQ=255)                                                        gttACTGGTCTAGAGACGTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAAt                                                                                 >  2:996465/2‑140 (MQ=255)                                                            cTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAATTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACTTAGAATGAcc                                                                             <  2:515433/140‑1 (MQ=255)                                                                tCTATATTCTTAACTTATTTTTCTAATTGAAAATAAACCTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGa                                                                         <  2:53246/140‑1 (MQ=255)                                                                  tatataCTTAACTTAATGTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACa                                                                       <  2:425131/140‑1 (MQ=255)                                                                    tataCTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACaaa                                                                     <  1:366155/140‑1 (MQ=255)                                                                      taCTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGc                                                                   >  1:253155/1‑140 (MQ=255)                                                                        cttaacttaTTTTTCTAATTGAAAATAAAACCAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCAt                                                                 <  1:297648/140‑1 (MQ=255)                                                                          taacgtaTTTTGCAAATTGAAAAAAAAACGAAACTGAGCTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTATATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCAttt                                                               <  1:591362/140‑1 (MQ=255)                                                                           aacttaTTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAAACAAAGCAtttt                                                              >  1:308536/1‑140 (MQ=255)                                                                               tttttttCTAATTGAAATTAAAATTTATGAGGTAGTC‑AGTATCACAAACATATGGTGGTATTGAAGGTCAGGTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAAtt                                                          <  1:23987/138‑1 (MQ=255)                                                                               taTTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAAtt                                                          <  2:514595/140‑1 (MQ=255)                                                                                aTTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTACGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTa                                                         >  1:30373/1‑140 (MQ=255)                                                                                aTTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTa                                                         >  2:167177/1‑140 (MQ=255)                                                                                aTTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTa                                                         >  1:672650/1‑140 (MQ=255)                                                                                aTTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATACGGTGGTATTGAAGGTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGAACTAGACAAAGCATTTTAAttt                                                         >  1:189976/1‑139 (MQ=255)                                                                                  ttttCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGAATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTagg                                                       >  1:248930/1‑140 (MQ=255)                                                                                  ttttCTAATTGAAAAAAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTagg                                                       >  1:747088/1‑140 (MQ=255)                                                                                      cTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGAAAAAGGATTTTAATTAGGAGGc                                                   >  1:41945/1‑140 (MQ=255)                                                                                       taagttaaaaTAAAACTAAACTGCACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCt                                                  <  2:703518/134‑1 (MQ=255)                                                                                       tAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGAAGGCt                                                  >  1:752085/1‑140 (MQ=255)                                                                                             aaaaTAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTAtattt                                            >  1:214057/1‑139 (MQ=255)                                                                                             aaaaTAAAACTAAACTGAACTTC‑AGTATCACAAACATATGAGGGTATTCAAGTTCAGTTTTATATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTACATTAGGAGGCTAtatta                                            >  2:805975/1‑140 (MQ=255)                                                                                                aTAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGACGCTCCGGCTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGAAGAATAACCAAGACAAAGCATGTTAATTAGGAGGCTATATTATaa                                         >  1:836290/1‑140 (MQ=255)                                                                                                 tAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGAGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAACCATTTTAATTAGGAGCCTATATGAaaaa                                        >  2:199349/1‑140 (MQ=255)                                                                                                     actaaactGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTa                                    >  1:841970/1‑140 (MQ=255)                                                                                                      ctaaactGAACTTC‑AGTATCACAAACATATGGTGGTAATGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTCTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTAt                                   >  2:749315/1‑140 (MQ=255)                                                                                                        aaactGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTc                                 >  2:913536/1‑140 (MQ=255)                                                                                                          actGAACTTT‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCa                               <  2:821166/140‑1 (MQ=255)                                                                                                           ctGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAGACATTTTAATTAGGAGGCTATATTTTAAATGTATTCCAt                              >  1:260391/1‑140 (MQ=255)                                                                                                           ctGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATAAGACTTCTATATTATCCATGTATTcttt                              >  1:472108/1‑137 (MQ=255)                                                                                                            tacacgtC‑AGTATCACAAACAGATGGGGGTATTGAAGTTAAGTGTTTTACGTAAGTAGATAACATATTTTATAGAATTTACGTAGAACGACCAAGACAAATCATTTTAATTAGGAGGCTATATTATAAATGTACTCCATg                             <  2:50659/134‑1 (MQ=255)                                                                                                            tGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATg                             <  2:95384/140‑1 (MQ=255)                                                                                                               aCTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGaa                          >  1:140376/1‑140 (MQ=255)                                                                                                                cTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAAc                         >  1:467379/1‑140 (MQ=255)                                                                                                                      gTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACTTAAt                    >  2:952812/1‑140 (MQ=255)                                                                                                                       tATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATc                   >  1:804410/1‑140 (MQ=255)                                                                                                                        ttctcaAACCTAGGGTGGTATTGAAGTTCAGTTTTTTCTGTAAGTAGATAACCTATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCa                  <  2:287853/136‑1 (MQ=255)                                                                                                                        aTCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGAAAGTAGATAACATATTTTATAGAATTTACGTAGAATCACCAAGACTAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCa                  <  1:581721/140‑1 (MQ=255)                                                                                                                        aTCACAAACAAATGGTGGTATTGAAATTCAGTCTTTTATGTCAGTACATAACATATTTTATAGAATTTACGTAGAATGACCCATTCTAATTAGTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCa                  <  1:581858/140‑1 (MQ=255)                                                                                                                         tCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAg                 <  1:882173/140‑1 (MQ=255)                                                                                                                         acacaAACATATGGTGGTATTGAAAGTCAGTTTTTTATGTAAGCAGATAACCTATTTTATAGAATTTACGTAGAATGACCAAGACAAACCATTTTCATTAGGAGGCTCTATTATAAATGTATTCCATGGAACATAATCAg                 <  1:308455/139‑1 (MQ=255)                                                                                                                           acaAACATAAGGTGGTATTGAAGTTCAGTTTTTTATATAATTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGtt               >  1:735906/1‑140 (MQ=255)                                                                                                                              aaCATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATCAGTTTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAgg            <  1:730109/140‑1 (MQ=255)                                                                                                                              aaCATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAgg            <  2:140376/140‑1 (MQ=255)                                                                                                                              aaCATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAgg            <  2:442107/140‑1 (MQ=255)                                                                                                                              aaCATATGGTGGTATTGAAGTTCAGTTTTTTATGGAAGCAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAgg            <  2:301156/140‑1 (MQ=255)                                                                                                                                cATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGCCAAAGCCTTTTGAGTATGTGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTc          <  2:361645/140‑1 (MQ=255)                                                                                                                                  tatGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCAt        >  1:586509/1‑140 (MQ=255)                                                                                                                                   attgtggtATTGAATTTCAGTTTTTTATGGAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATATTCAGTTAGGTCAtt       <  1:392223/137‑1 (MQ=255)                                                                                                                                      gtggtATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTaaa    >  1:456471/1‑140 (MQ=255)                                                                                                                                        ggtATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAat  <  2:329013/140‑1 (MQ=255)                                                                                                                                            |                                                                                                                                        AACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTC‑AGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAAT  >  USA300TCH1516_ALE/739685‑739958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.