| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1262909 | 79 (0.890) | 3 (0.040) | 3/258 | 11.0 | 3.8% | intergenic (+34/‑193) | sucD/lytN_1 | Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN |
| ? | USA300TCH1516_ALE | = 1262932 | 80 (0.970) | intergenic (+57/‑170) | sucD/lytN_1 | Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCAGAAATTGGTTCAACATTAATTGAAGCTGCTAAAGAAGCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1262798‑1262909‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atagcccattTCCGATACTTTTATAAAGTATGGAATGGGCTATAGCCATTTATATCATCTTTTAACTTTATTTATTAACAGTTAATAATGATTCATAAATACCTGCTTCTTTAGCAGCTTCAATTAATGTTGAACCAATTTCTGAAGGT < USA300TCH1516_ALE/1262932‑1262794 TCAGAAATTGGTTCAAAATTAATTGAAGCCGCTAAAGAAGCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGAGGATATAAATGGCTATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGG < 2:28248/140‑1 TTGGTTCAACATTAATTGAAGCTGCTAAAGAAGCAGGTAGTTAGGAGGCATTATTAACTGTTAATAAATAAAGGTAAGAGATGATATAAATGGCTATAGCCCATTTCCGATACTATTATAAAGAAAGAAATGGGCTATAG > 2:804674/1‑140 CATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCTATAGCCATTTATATCATCTTTTAACTTTATTTATTAACAGTTAATAATGATT < 1:262991/140‑1 ATAGCCCATTTCCGATGCTTTAATAAAGTATGGAATGGGCTATAGCCATTTATATCATCTTTTAACTTTATTTATTAACAATTAATAATGATTCATAAATACCTGCTTCTTTAGCAGCTTCAATTAATGTTGAACCAATT > 1:516792/1‑140 ATAGCCCATTTCCGATACTTTTATAAAGTATGGTATGGGCTATAGCCATTTATATCATCTTTTAACTTTATTTATTAACAGTTAATAATGATTCATAAATACCTGCTTCTTTAGCAGCTTCAATTAATGTTGAACCAATT > 2:664279/1‑140 ATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCTATAGCCATTTATATCATCTTTTAACTTTATTTATTAACAGTTAATAATGATTCATAAATACCTGCTTCTTTAGCAGCTTCAATTAATGTTGAACCAATT > 2:666947/1‑140 GCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCTATAGCCATTTATATCATCTTTTAACTTTATTTATTAACAGTTAATAATGATTCATAAATACCTGCTTCTTTAGCAGCTTCAATTAATGTTAAACCAATTTCg > 1:438234/1‑139 CCCATTTCCGATACTTTTATAAAGTATGGAATGGGCTATAGCCATTTATATCATCTTTTAACTTTATTTATTAACAGTTAATAATGATTCATAAATACCTGCTTCTTTAGCAGCTTCAATTAATGTTGAACCAATTTCTG > 2:577325/1‑140 CCATTTCCGATACTTTTATAAAGTATGGAATGGGCTATAGCCATTTATATCATCTTTTAACTTTATTTATTAACAGTTAATAATGATTCTTAAATACCTGCTTCTTTAGCAGCTTCAATTAATGTTGAACAAATTTCTGA > 1:354498/1‑140 TTCCGATACTTTTATAAAGTATGGAATGGGCTATAGCCATTTATATCATCTTTTAACTTTATTTATTAACAGTTAATAATGATTCATAAATACCTGCTTCTTTAGCAGCTTCACTTAATGTTGAACCAATTTCTGAAGGT > 1:447525/1‑140 TCAGAAATTGGTTCAACATTAATTGAAGCTGCTAAAGAAGCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1262798‑1262909‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atagcccattTCCGATACTTTTATAAAGTATGGAATGGGCTATAGCCATTTATATCATCTTTTAACTTTATTTATTAACAGTTAATAATGATTCATAAATACCTGCTTCTTTAGCAGCTTCAATTAATGTTGAACCAATTTCTGAAGGT < USA300TCH1516_ALE/1262932‑1262794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |