BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 4419	10 (1.720)	14 (0.010)	7/262	0.4	0.75%	intergenic (+384/‑81)	USA300HOU_pUSA300HOUMR0006/cadR	hypothetical protein/cadmium binding protein
*	?	NC_012417	= 1946	3682 (1.040)	14 (0.010)	7/262	0.4	0.75%	intergenic (+179/+147)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 4087 total aligned reads displayed.

TCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGA  >  NC_012417/1807‑2081

  acacTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtt                                                                                                                                       <  2:776323‑M2/140‑3 (MQ=255)

     cTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtttat                                                                                                                                    <  1:1000356‑M2/140‑6 (MQ=255)

     cTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtttat                                                                                                                                    <  1:468726‑M2/140‑6 (MQ=255)

      tGTTTTTTTATTCCTATTGGTGTTGTTGTTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtttatt                                                                                                                                   >  2:607996‑M2/1‑134 (MQ=255)

        tttttttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtttattga                                                                                                                                 <  1:90134‑M2/140‑9 (MQ=255)

        tttttttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtttattga                                                                                                                                 <  1:654439‑M2/140‑9 (MQ=255)

           ttttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGt                                                                                                                              >  1:384604/1‑140 (MQ=255)

           tttgATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTATATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTGTAAAGAAGAAAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGt                                                                                                                              <  1:125365/140‑1 (MQ=255)

            tttATTCCTATTGGTGTTGTTTCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGtt                                                                                                                             <  1:195152/140‑1 (MQ=255)

             ttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGCTGAAAAAGATGATTATCATTAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTg                                                                                                                            <  1:734130/140‑1 (MQ=255)

             ttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTATGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTg                                                                                                                            >  1:668060/1‑140 (MQ=255)

              tATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTCATGCCGAGAAAATTTATTGATGTTga                                                                                                                           <  2:625139/140‑1 (MQ=255)

               gttCCTATTGGTGTTGTTGCTTAGTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                          <  2:67181/139‑1 (MQ=255)

               aTTTCTTTTGTTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                          <  2:59274/140‑1 (MQ=255)

               aTTCTTATTGTTGTTGTTGCTTACTTTTTGTTTTACGTAAAATATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                          <  2:188367/140‑1 (MQ=255)

               aTTCCTCTTGGTGTTGTTGGTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                          <  2:303881/140‑1 (MQ=255)

               aTTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAAGAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                          <  2:338000/140‑1 (MQ=255)

                    tATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAGACGTATGATTATCATGGAGATAATAAAGCATACAGGACGCGTGTAAGCCGAGAAAGCTCACTAATGTTgagtatga                                                                                                                     >  1:960652/1‑135 (MQ=255)

                            ttgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                             <  1:438888/140‑1 (MQ=255)

                            ttgttgCGTATTTTGTGTTTTTTTATAAATATGATGCTTTTAACGAGATAAATTAAAAATATGATTATCATGAATATAATAAAAAATAGACGACGCATTTATGCCGAAAAAATTTATTGATTTTGAGAAGAACCCTTacc                                                                                                             <  2:504236/140‑3 (MQ=25)

                               ttGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTCTGCGGATAAAATTTATTGATGTTGAGAACAACCCTTAACTat                                                                                                          <  1:935959‑M2/140‑3 (MQ=255)

                                 gCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAAAAGACCCCTTAACTaaaa                                                                                                        <  1:566391‑M2/140‑5 (MQ=255)

                                   ttACTTTTTTTTTTTTTTTTAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTTATTTTTAGAAGAACCCTTAACTaaactt                                                                                                      <  2:722732‑M2/140‑7 (MQ=255)

                                   ttACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaaactt                                                                                                      <  1:291695‑M2/140‑7 (MQ=255)

                                     aCTTTTTTTATTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGc                                                                                                    <  2:819895/140‑1 (MQ=255)

                                                tacTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATCAAGATAATAAAAAATAGACGACGCATTTATGCCAAACAGATTTAATGAAGCAGAGAAAAACACTTAACTAAATATCCATACGAATTTc                                                                                         >  2:690697/3‑140 (MQ=255)

                                                     taAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTTATGATGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                    >  2:126719/1‑140 (MQ=255)

                                                     taAAGATGATGCTTTTGAAGAGAATGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACAATTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                    <  1:210493/140‑1 (MQ=25)

                                                      aaaGATGATGCTTTTGATGAGAGGGAGGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                   >  2:463495/1‑140 (MQ=255)

                                                      aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCATTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                   >  2:264651/1‑140 (MQ=255)

                                                      aaaGAGTATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                   <  1:237992/140‑1 (MQ=255)

                                                        agagGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                 <  1:499600/140‑1 (MQ=255)

                                                        aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTAATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                 >  1:519391/1‑140 (MQ=255)

                                                        aGATGATGCTTTTGACGAGATAGAACCTATATATGGTTATCATGAAGATAATAAAAAATAGACGCCGCATTTATGCCGGGGAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAGGCCGGCATGGc                                                                                 >  1:485332/1‑140 (MQ=21)

                                                           tgatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTg                                                                              >  1:714418/1‑140 (MQ=255)

                                                            gatgCTTTTGACGAGATGGAAGAAAAATATGATTATCCTGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGa                                                                             >  1:947971/1‑140 (MQ=255)

                                                              tgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTGGAGAAGAACCCGTAACTAACGTTGCAGACGAATGTCGGCATAGCGTGAGc                                                                           >  1:826843/1‑140 (MQ=255)

                                                               gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCt                                                                          <  1:810507/140‑1 (MQ=255)

                                                                cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAATATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                         <  1:449451/140‑1 (MQ=255)

                                                                cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCGTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCATTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                         >  2:535976/1‑140 (MQ=255)

                                                                cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGcaa                                                                         >  1:977846/1‑138 (MQ=255)

                                                                cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                         >  2:900022/1‑140 (MQ=255)

                                                                cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                         >  2:706060/1‑140 (MQ=255)

                                                                cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTAGGCATAGCGTGAGCTa                                                                         >  1:595787/1‑140 (MQ=255)

                                                                  tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAtt                                                                       <  2:41893/140‑1 (MQ=255)

                                                                  tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAtt                                                                       >  1:107858/1‑140 (MQ=255)

                                                                  tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAtt                                                                       >  1:364823/1‑140 (MQ=255)

                                                                  tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGAATAGCGTGCGCTAtt                                                                       >  1:223605/1‑140 (MQ=255)

                                                                     gACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAg                                                                    >  2:486068/1‑140 (MQ=255)

                                                                     gACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAg                                                                    <  1:917706/140‑1 (MQ=255)

                                                                        tggatgGAAGAAAAATATGATTAGCATGAAGATAATAAAAAATAGACGNCGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaaacttgcagacgaatggtcggcttaatagctcacgctatgcc                                                                 >  1:849047‑M2/3‑97 (MQ=255)

                                                                        gagaTGGAAGAAAAATATGGTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCg                                                                 <  2:377953/140‑1 (MQ=255)

                                                                        cagaAGGAAGAAAAAAATGATTAACATAAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCg                                                                 <  1:695296/139‑1 (MQ=255)

                                                                          gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAGCTAAACTTACAGACGAATGTCGGCATAGCGTGAGGTATTAAGCCGAc                                                               >  2:318427/1‑140 (MQ=255)

                                                                          gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAc                                                               <  2:798553/140‑1 (MQ=255)

                                                                          gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAc                                                               >  1:635887/1‑140 (MQ=255)

                                                                           aTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTCAGCCGAcc                                                              >  2:520984/1‑140 (MQ=255)

                                                                                 gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                        <  1:767464/140‑1 (MQ=255)

                                                                                 gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                        <  2:225924/140‑1 (MQ=255)

                                                                                  aaaaaTATGATTGTCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                       <  2:884907/140‑1 (MQ=255)

                                                                                    aaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACaa                                                     <  1:402836/140‑1 (MQ=255)

                                                                                        ataattattATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                 <  2:758679/137‑1 (MQ=255)

                                                                                           attttaaTGAAGATAATAAAAAATAGACGACGTATTTATGCTGTGAAAGTTTATTGAGGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAGGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTgg                                              <  1:27622/134‑1 (MQ=17)

                                                                                           aTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAGAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTgg                                              >  1:581797/1‑140 (MQ=255)

                                                                                             tagcATGAAGAGAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGa                                            <  1:310608/137‑1 (MQ=255)

                                                                                              aTCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAATTTTGGGAt                                           >  1:788096/1‑140 (MQ=255)

                                                                                                 aTGAAGATAATAAAAAAAAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGt                                        <  1:258575/140‑1 (MQ=255)

                                                                                                  tGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGGAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTGTGGGATTGtt                                       >  2:917839/1‑140 (MQ=255)

                                                                                                   gAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTa                                      >  1:419991/1‑140 (MQ=255)

                                                                                                    aaGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTaa                                     >  2:399267/1‑140 (MQ=255)

                                                                                                     aGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAg                                    <  2:939454/140‑1 (MQ=255)

                                                                                                        taataaAAAATAGACGACGCATTTATGCCGAGAAAATTTAATGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGt                                 >  2:652741/1‑140 (MQ=255)

                                                                                                         aataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAGGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGtt                                >  2:842368/1‑140 (MQ=255)

                                                                                                          ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTc                               >  1:537296/1‑140 (MQ=255)

                                                                                                           taaAAAATAGACGACGCATTTATGCCCAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAGAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                              <  1:329145/140‑1 (MQ=255)

                                                                                                            aaaaaaTAGACGATGCATTGATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACGTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                             <  1:884424/140‑1 (MQ=255)

                                                                                                             aaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAACATTCGACAAGTTTTGGGATTGTTAAGGGTTccaa                            >  1:753560/1‑138 (MQ=255)

                                                                                                               aaaaAGTCGACGAATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAAACCTTAACTAAACATGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACTATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                          <  1:552992/140‑1 (MQ=11)

                                                                                                               aaaTAGACGACGCATTTATGCAGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                          <  1:178167/140‑1 (MQ=255)

                                                                                                                 aTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCt                        <  2:980191/140‑1 (MQ=37)

                                                                                                                  tAGACGTCGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTc                       <  2:36330/140‑1 (MQ=25)

                                                                                                                  tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGAGAGATATTAAGTCGACAATTCGACAAGTTTTGGGATTGTTAACGGTTCCGAGGccc                       >  2:207663/1‑138 (MQ=11)

                                                                                                                  gaGACGACTCATTTATGCCGAGAAAATTTATTGATGTTGTGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTc                       <  2:283533/139‑1 (MQ=255)

                                                                                                                   aGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAGGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGGTAAGGGGTCCGAGGCtaa                      >  2:248137/1‑138 (MQ=255)

                                                                                                                    gacgacGCATTTATGCCGCGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGCTTTGGGATTGTTAAGGGTTCCGAGGCTCaa                     >  2:44322/1‑140 (MQ=25)

                                                                                                                     acgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTAGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                    >  2:108486/1‑140 (MQ=25)

                                                                                                                            atgtATTCCGAGAAAATTTATTGATGTTGGGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa             <  2:958701/137‑1 (MQ=16)

                                                                                                                            aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa             >  2:166296/1‑140 (MQ=33)

                                                                                                                             tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCCATaa            >  1:148145/1‑140 (MQ=18)

                                                                                                                             tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaa            <  1:995022/140‑1 (MQ=32)

                                                                                                                             tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaa            >  1:34189/1‑140 (MQ=33)

                                                                                                                             gttATGCCGAGAAAATTTATTGGTGTTGAGAAGAACCCTTAACTAAACTTACAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTCTTAAGGGTTCCGAGGCTCAACGTCAATaa            >  2:740112/2‑140 (MQ=12)

                                                                                                                              ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaa           >  2:863839/1‑140 (MQ=33)

                                                                                                                              ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaa           >  2:558285/1‑140 (MQ=33)

                                                                                                                               tATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAg          <  1:16206/140‑1 (MQ=33)

                                                                                                                               tATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAg          <  2:148328/140‑1 (MQ=32)

                                                                                                                               tATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAg          <  1:870231/140‑1 (MQ=32)

                                                                                                                                aTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATCAAGc         <  1:682691/140‑1 (MQ=17)

                                                                                                                                   ccGAGAAAATTTATTGATGTTGAGATGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt      <  1:615166/140‑1 (MQ=17)

                                                                                                                                      agaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTgg   <  2:577290/140‑1 (MQ=31)

TCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGA  >  NC_012417/1807‑2081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.