New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	3782590 =	33 (1.100)	5 (0.180)	5/270	3.3	14.1%	intergenic (‑28/+52)	cysE/gpsA	serine acetyltransferase/glycerol‑3‑phosphate dehydrogenase (NAD+)
	?	NC_000913_3_bme_pgi	3782613 =	30 (1.060)					intergenic (‑51/+29)	cysE/gpsA	serine acetyltransferase/glycerol‑3‑phosphate dehydrogenase (NAD+)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTTACTAGGTCGTGCACGCAAGGACGAGCGCAGCAGCCACTAACCCCAGGGAACCTTTGTTACCGCTATGACCCGGCCCGCGCAGAACGGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_bme_pgi/3782741‑3782590 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggccggGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAAC  >  NC_000913_3_bme_pgi/3782613‑3782758                                                                                                                                                                                                                                                                                                            CGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTTACTAGGTCGTGCACGCAAGGACGAGCGCAGCAGCCACTAACCCCAGGGAACCTTTGTTACCGCTATGACCCGGCCCGCGCAGAACGGGC                                                                                                                                                       >  1:40352/1‑149                                                                                                                               GACCCGGCCCGCGCAGAACGGGCC‑GGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAA                                                                       >  1:444926/1‑102                                                                                                                               GACCCGGCCCGCGCAGAACGGGCC‑GGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAA                                                                       <  2:444926/102‑1                                                                                                                                ACCCGGCCCGCGCAGAACGGGCC‑GGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTC                       >  1:74268/1‑149                                                                                                                                 CCCGGCCCGCGCAGAACGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGC                                                                                                               >  1:503552/1‑61                                                                                                                                 CCCGGCCCGCGCAGAACGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGC                                                                                                               <  2:503552/61‑1                                                                                                                                                  GGGCGGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTT      <  2:242087/149‑1                                                                                                                                                  GGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTTATAAATTTCCTCGGATATAGGCATTT      >  1:148616/1‑149                                                                                                                                                      CGGGTCATAGCGGTAACAAAGGTTCCCTGGGGATAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCCAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCCTTTCAcc  >  1:504380/1‑147                                                                                                                                                                                                                                                                                                            CGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTTACTAGGTCGTGCACGCAAGGACGAGCGCAGCAGCCACTAACCCCAGGGAACCTTTGTTACCGCTATGACCCGGCCCGCGCAGAACGGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_bme_pgi/3782741‑3782590 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggccggGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAAC  >  NC_000913_3_bme_pgi/3782613‑3782758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.