New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	3782590 =	33 (1.100)	5 (0.180)	5/270	3.3	14.1%	intergenic (‑28/+52)	cysE/gpsA	serine acetyltransferase/glycerol‑3‑phosphate dehydrogenase (NAD+)
	?	NC_000913_3_bme_pgi	3782613 =	30 (1.060)					intergenic (‑51/+29)	cysE/gpsA	serine acetyltransferase/glycerol‑3‑phosphate dehydrogenase (NAD+)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAAACTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAAC  >  NC_000913_3_bme_pgi/3782473‑3782758                                                                                                                                             |                                                                                                                                                  aaaaCTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATAGTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCg                                                                                                                                           <  1:204573/149‑1 (MQ=255)     cTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTaa                                                                                                                                       <  1:463237/149‑1 (MQ=255)         ccAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACaaa                                                                                                                                   >  2:35256/1‑149 (MQ=255)         ccAGCATGGGCTCAGAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACaaa                                                                                                                                   <  1:206430/149‑1 (MQ=255)                   cTCACAGTCCGCCAGCGTTCTGGCTTAGGCTTTAATATTGTACCAGACAATTTCCAGTTCTGCATACGCCATTGCTTACTCCACACGATGAGATAATGACCGGCCCTTTCCGAGCGGGCCGGGTCATAGCGGAAACAAAGATTCCCTgg                                                                                                                         >  2:194247/1‑149 (MQ=255)                    tCACATTCCCTCAGGGTTGTGGCTTCGGCGTTAATCTTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTggg                                                                                                                        <  2:203217/149‑1 (MQ=255)                      acaGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTGCTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGt                                                                                                                      <  2:411639/149‑1 (MQ=255)                             gCCAGCGTTCTGTCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGgc                                                                                                               <  1:285679/149‑1 (MQ=255)                                 tcGTTCTGGCGTCGGCTTTAATATGGTTCCAGTCAATTTCCAGTTCTTCACACGACATTGCTTCCTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGgctgct                                                                                                           <  2:294708/148‑1 (MQ=255)                                                    aaTATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCa                                                                                        <  1:491265/149‑1 (MQ=255)                                                       atTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTGACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGa                                                                                     >  1:205353/1‑149 (MQ=255)                                                           ttCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTa                                                                                 >  1:11898/1‑149 (MQ=255)                                                              cAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAg                                                                                                                   >  2:256993/1‑112 (MQ=255)                                                              cAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAg                                                                                                                   <  1:256993/112‑1 (MQ=255)                                                                   aaTTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGCCATCGTAAAGTc                                                                         >  2:320435/1‑149 (MQ=255)                                                                      ttCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTCGTAAAGTCAAt                                                                      >  1:505776/1‑149 (MQ=255)                                                                                tcACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTcgc                                                            <  1:375833/149‑1 (MQ=255)                                                                                       aCATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACACAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTTGACGACCTAGTACAGTCCATGCTGCCACGCGCGCCtt                                                     >  2:469138/1‑149 (MQ=255)                                                                                         aTTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAATCAATGCTGCCTCGCGCGCGtttt                                                   >  2:70539/1‑149 (MQ=255)                                                                                                aCTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGc                                                                                             >  2:283939/1‑100 (MQ=255)                                                                                                aCTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGc                                                                                             <  1:283939/100‑1 (MQ=255)                                                                                                     acacGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAAtata                                       >  1:117363/1‑149 (MQ=255)                                                                                                        cGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCTTTGCTTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATataata                                    <  1:519547/149‑1 (MQ=255)                                                                                                         gATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTAAATGCTGCCTCGCGCGCGTTTTTTCCGCAATataatca                                   >  1:208956/1‑147 (MQ=255)                                                                                                             agaTAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGa                               >  2:20516/1‑149 (MQ=255)                                                                                                                     aCCGGCGCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCTCTCGTCCTTGCGTGCACGATCTAGTAAATTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTc                       <  2:456320/149‑1 (MQ=255)                                                                                                                         gCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCg                   <  1:40352/149‑1 (MQ=255)                                                                                                                                 tGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTCTTgg           >  1:228311/1‑149 (MQ=255)                                                                                                                                  gcgcGGGGCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGc          <  1:35256/149‑1 (MQ=255)                                                                                                                                   cgcgGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCa         <  2:11898/149‑1 (MQ=255)                                                                                                                                      gggCGGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCAttt      <  2:242087/149‑1 (MQ=255)                                                                                                                                      gggCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTTATAAATTTCCTCGGATATAGGCAttt      >  1:148616/1‑149 (MQ=255)                                                                                                                                          cGGGTCATAGCGGTAACAAAGGTTCCCTGGGGATAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCCAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCCTTTCacc  >  1:504380/1‑147 (MQ=255)                                                                                                                                             |                                                                                                                                                  AAAACTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAAC  >  NC_000913_3_bme_pgi/3782473‑3782758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.