| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 3226187 | 62 (0.970) | 8 (0.130) | 8/262 | 7.5 | 12.3% | intergenic (+16/‑47) | ebgC/ygjI | evolved beta‑D‑galactosidase, beta subunit; cupin superfamily/putative transporter |
| ? | NC_000913_3_KO_pgi | = 3226192 | 56 (0.930) | intergenic (+21/‑42) | ebgC/ygjI | evolved beta‑D‑galactosidase, beta subunit; cupin superfamily/putative transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGAAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_KO_pgi/3226036‑3226187‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcaaaCTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGTTATTGCAGATAAACCGATACGCTTCATGGATATCGCAAATAACGATTTGCCCTTCGTGGACCTC < NC_000913_3_KO_pgi/3226192‑3226046 AGAAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCA > 2:649570/1‑150 AAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAA > 1:18663/1‑150 GAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTATGGCGGCAAACTCCTTTTGCCGCCGTA < 3:120421/150‑1 TATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTATGGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAA < 1:259202/150‑1 GCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGA < 3:168349/150‑1 GTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGTTATTGC > 2:478830/1‑150 GGTTATTTCCATAACAAATAACAACTACGGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGTTATTGCAGATAAAC > 3:27474/1‑134 GGTTATTTCCATAACAAATAACAACTACGGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGTTATTGCAGATAAAC < 4:27474/134‑1 TTATTTCCATAACAAATAACAACTACGGCGGCAAACTCCTTTTGCCGCCGTAGTTG < 1:168417/56‑1 TTATTTCCATAACAAATAACAACTACGGCGGCAAACTCCTTTTGCCGCCGTAGTTG > 2:168417/1‑56 GGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGTTATTGCAGATAAACCGATACGCTTCATGGATATCGCAAATAACGATTTGCCCTTCGTG < 2:57887/150‑1 GGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGTTATTGCAGATAAACCGATACGCTTCATGGATATCGCAAATAACGATTTGCCCTTCGTG < 3:339058/150‑1 GGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGTTATTGCAGATAAACCGATACGCTTCATGGATATCGCAAATAACGATTTGCCCTTCGTGGAC < 3:52581/150‑1 CAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGTTATTGCAGATAAACCGATACGCTTCATGGATATCGCAAATAACGATTTGCCCTTCGTGGACCT > 3:134828/1‑150 AAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGTTATTGCAGATAAACCGATACGCTTCATGGATATCGCAAATAACGATTTGCCCTTCGTGGACCTC > 2:195196/1‑150 AGAAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_KO_pgi/3226036‑3226187‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcaaaCTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGTTATTGCAGATAAACCGATACGCTTCATGGATATCGCAAATAACGATTTGCCCTTCGTGGACCTC < NC_000913_3_KO_pgi/3226192‑3226046 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |