mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_KO_pgi | 4,294,494 | 0 | C | T | 44.9% | 36.1 / 69.6 | 69 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 30 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 3944978 | NA (NA) | 8 (0.210) | 7/268 | 3.8 | 28.5% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_KO_pgi | = 4038811 | 21 (0.540) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_KO_pgi | 2727891 = | NA (NA) | 7 (0.190) | 7/268 | 3.8 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_KO_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_KO_pgi | = 227052 | 27 (0.690) | 7 (0.190) | 7/268 | 3.8 | 21.3% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_KO_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_KO_pgi | 2430929 = | NA (NA) | 10 (0.270) | 6/266 | 4.2 | NA | noncoding (1/84 nt) | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_KO_pgi | = 4294458 | NA (NA) | noncoding (190/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913_3_KO_pgi | 225154 = | NA (NA) | 7 (0.190) | 6/270 | 4.2 | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_KO_pgi | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_KO_pgi | = 4294458 | NA (NA) | 9 (0.240) | 5/266 | 4.6 | 12.2% | noncoding (190/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913_3_KO_pgi | = 4294488 | 68 (1.750) | noncoding (220/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913_3_KO_pgi | = 4008430 | NA (NA) | 9 (0.240) | 5/266 | 4.6 | NA | noncoding (34/34 nt) | REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_KO_pgi | = 4294458 | NA (NA) | noncoding (190/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913_3_KO_pgi | 3392261 = | 58 (1.490) | 9 (0.240) | 5/270 | 4.6 | 13.9% | noncoding (186/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | NC_000913_3_KO_pgi | = 4294460 | NA (NA) | noncoding (192/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913_3_KO_pgi | 3392168 = | 59 (1.520) | 9 (0.240) | 5/266 | 4.6 | 13.8% | noncoding (93/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | NC_000913_3_KO_pgi | = 4294458 | NA (NA) | noncoding (190/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913_3_KO_pgi | = 2794102 | 55 (1.410) | 9 (0.240) | 5/266 | 4.6 | 14.7% | noncoding (75/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_KO_pgi | = 4294458 | NA (NA) | noncoding (190/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||