New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_KO_pgi	1086010 =	68 (1.340)	6 (0.130)	6/268	6.1	8.2%	coding (1019/1065 nt)	phoH	ATP‑binding protein; putative PhoH family P‑loop ATPase
	?	NC_000913_3_KO_pgi	1086040 =	71 (1.490)					coding (1049/1065 nt)	phoH	ATP‑binding protein; putative PhoH family P‑loop ATPase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCACCAGCCAGGGGCAAATAAAAATGGTTGTTTCAGAAAAAGCGCTAGTCCGGGCATAAACACCCAAAACAAAGCCCGGTTCGCCCGGGCTCTGCACCGATAACACACTTAACTGTAGGCATGCAGCGTACGTTGGCAAAGTGCCGAACGTACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_KO_pgi/1086165‑1086010 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgtacgcTGCATGCCTACAGTTAAGTGTGTTATCGGTGCAGAGCCCGGGCGAACCGGGCTTTGTTTTGGGTGTTTATGCCCGGACTAGCGCTTTTTCTGAAACAACCATTTTTATTTGCCCCTGGCTGGTGAAGTGTACGCTCATCCTGTGGCTT  >  NC_000913_3_KO_pgi/1086040‑1086187                                                                                                                                                                                                                                                                                                                  TTCACCAGCCAGGGGCAAATAAAAATGGTTGTTTCAGAAAAAGCGCTAGTCCGGGCATAAACACCCAAAACAAAGCCCGGTTCGCCCGGGCTCTGCACCGATAACACACTTAACTGTAGGCATGCAGCGTACGTTGGCAACGTGCCGAA                                                                                                                                                             >  1:98046/1‑149        GCCAGGGGCAAATAAAAATGGTTGTTTCAGAAAAAGCGCTAGTCCGGGCATAAACACCCAAAACAAAGCCCGGTTCGCCCGGGCTCTGCACCGATAACACACTTAACTGTAGGCATGCAGCGTACGTTGGCAAAGTGCCGAACGTACGC                                                                                                                                                      <  1:25178/149‑1                                                                   AAAACAAAGCCCGGTTCGCCCGGGCTCTGCACCGATAACACACTTAACTGTAGGCATGCAGCGTACGTTGGCAAAGTGCCGAA                                                                                                                                                             <  1:275993/83‑1                                                                   AAAACAAAGCCCGGTTCGCCCGGGCTCTGCACCGATAACACACTTAACTGTAGGCATGCAGCGTACGTTGGCAAAGTGCCGAA                                                                                                                                                             >  2:275993/1‑83                                                                                                              TTAACTGTAGGCATGCAGCGTACGTTGGCAAAGTGCCGAACGTACGCTGCATGCCTACAGTTAA                                                                                                                                     >  1:145374/1‑64                                                                                                              TTAACTGTAGGCATGCAGCGTACGTTGGCAAAGTGCCGAACGTACGCTGCATGCCTACAGTTAA                                                                                                                                     <  2:145374/64‑1                                                                                                                     TAGGCATGCAGCGTACGTTGGCAAAGTGCCGAACGTACGCTGCATGCCTACAGTTAAGTGTGTTATCGGTGCAGAGCCCGGGCGAACCGGGCTTTGTTTTGGGTGTTTATGCCCGGACTAGCGCTTTTTCTGAAACAACCATTTTTATT                                         >  1:141075/1‑149                                                                                                                              AGCGTACGTTGGCAAAGTGCCGAACGTACGCTGCATGCCTACAGTTAAGTGTGTTATCGGTGCAGAGCCCGGGCGAACCGGGCTTTGTTTTGGGTGTTTATGCCCGGACTAGCGCTTTTTCTGAAACAACCATTTTTATTTGCCCCTGG                                >  2:748527/1‑149                                                                                                                               GCGTACGTTGGCAAAGTGCGGAACGTACGCTGCATGCCTACAGTTAAGTGTGTTATCGGTGCAGAGCCCGGGCGAACCGGGCTTTGTTTTGGGTGTTTATGCCCGGACTAGCGCTTTTTCTGAAACAACCATTTTTATTTGCCCCTGGC                               >  2:763218/1‑149                                                                                                                                       TGGCAAAGTGCCGAACGTACGCTGCATGCCTACAGTTAAGTGTGTTATCGGTGCAGAGCCCGGGCGAACCGGGCTTTGTTTTGGGGGTTTATGCCCGGACTAGCGCTTTTTCTGAAACAACCATTTTTATTTGCCCCTGGCTGGTGAAG                       >  1:572432/1‑149                                                                                                                                                      CGTACGCTGCATGCCTACAGTTAAGTGTGTTATCGGTGCAGAGCCCGGGCGAACCGGGCTTTGTTTTGGGTGTTTATGCCCGGACTAGCGCTTTTTCTGAAACAACCATTTTTATTTGCCCCTGGCTGGTGAAGTGTACGCTCATCCTG        <  1:763218/149‑1                                                                                                                                                            CTGCATGCCTACAGTTACGTGTGTTATCGGTGCAGAGCCCGGGCGAACCGGGCTTTGTTTTGGGTGTGTATGCCCGGACTAGCGCTTTTTCCGTCACAAGCATTTTTTTTTGCCCCTGTTTGGTGACGTTTACGCCAATCCTGTGGCct  >  2:164395/1‑147                                                                                                                                                            CTGCATGCCTACAGTTAAGTGTGTTATCGGTGCAGAGCCCGGGCGAACCGGGCTTTGTTTTGGGTGTTTATGCCCGGACTAGCGCTTTTTCTGAAACAACCATTTTTATTTGCCCCTGGCTGGTGAAGTGTACGCTCATCCTGTGGCTT  <  1:75077/149‑1                                                                                                                                                                                                                                                                                                                  TTCACCAGCCAGGGGCAAATAAAAATGGTTGTTTCAGAAAAAGCGCTAGTCCGGGCATAAACACCCAAAACAAAGCCCGGTTCGCCCGGGCTCTGCACCGATAACACACTTAACTGTAGGCATGCAGCGTACGTTGGCAAAGTGCCGAACGTACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_KO_pgi/1086165‑1086010 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgtacgcTGCATGCCTACAGTTAAGTGTGTTATCGGTGCAGAGCCCGGGCGAACCGGGCTTTGTTTTGGGTGTTTATGCCCGGACTAGCGCTTTTTCTGAAACAACCATTTTTATTTGCCCCTGGCTGGTGAAGTGTACGCTCATCCTGTGGCTT  >  NC_000913_3_KO_pgi/1086040‑1086187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.