Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_vch_pgi 2,393,422 Δ13 bp coding (1613‑1625/1842 nt) nuoL ← NADH:ubiquinone oxidoreductase, membrane subunit L

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_vch_pgi 2393422 2393434 13 25 [0] [0] 25 nuoL NADH:ubiquinone oxidoreductase, membrane subunit L

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_vch_pgi = 23934210 (0.000)25 (1.310) 24/288 0.0 100% coding (1626/1842 nt) nuoL NADH:ubiquinone oxidoreductase, membrane subunit L
?NC_000913_3_vch_pgi 2393435 = 0 (0.000)coding (1612/1842 nt) nuoL NADH:ubiquinone oxidoreductase, membrane subunit L

TAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_vch_pgi/2393278‑2393421
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTCAACATG  >  NC_000913_3_vch_pgi/2393435‑2393580
                                                                                                                                                                                                                                                                                                  
aAGCCGTTCTCACCTAACAGCAGACCTGTACCTGCAAAGCGCGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTAAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTG                                                                                                                                               <  2:60936/148‑1
      TTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGT                                                                                                                                              <  2:113536/144‑1
      TTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGT                                                                                                                                              >  1:113536/1‑144
                            TACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATGGCGTTTCAGCAACCAGGCAATACCCAGGGACGGCTCGACGAACACTATGTCCTCCAGCCCACGTTGTACCAGCCGGTGCCCAGCCGCCGGCgtg                                                                                                                   >  2:339407/1‑146
                                 GCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCA                                                                                                              >  1:219666/1‑149
                                   AAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACT                                                                                                            >  2:298220/1‑149
                                   AAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACT                                                                                                            <  1:157656/149‑1
                                      GCGGGAAAGGACATCCGGTATGTTCATCAGTGAGGTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGATCGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTT                                                                                                         <  2:34957/149‑1
                                           AAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGA                                                                                                    <  1:16654/149‑1
                                            AAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGCCGCACTGTTGGCGAT                                                                                                   >  1:157238/1‑149
                                               GACAGCCGGGATGTTCATCATTGAGTTCGGCGGATCGCGCTTAAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCGGGGGTGCAGGATACGGCCCGGCGCACTGTTGGCGATGGA                                                                                                <  1:81810/149‑1
                                                aaaaCCGGGATGTTCATCATTGAGGTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAG                                                                                               <  2:241600/145‑1
                                                   GCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAATGTCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGTGGTC                                                                                            >  1:288162/1‑149
                                                    CCGGGATTTTCATCATTGAGTTCAGCGGATGGCGCGTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAGCACTTTGTCATACAGCCAGCGTTGTGCCACCAGGTGCCCCGCAGACGGCCCGGCGCCCTGTTGGCGCCGGACGTCg                                                                                           >  2:167056/1‑148
                                                                  ATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCCACCGGCCCGGCGCCCCCTCTCCGCTGGAGGTCACCCGAGTACCTTTc                                                                             >  2:267376/1‑148
                                                                            GCGGATCGCGGTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACA                                                                   <  1:267376/149‑1
                                                                                     GTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTG                                                          <  1:284502/149‑1
                                                                                      TTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGC                                                         <  1:91604/149‑1
                                                                                           GCAACCAGGCAATACCCAGGAGCGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTAACCTGCGTTGGTTTACCCAGCCACAGCCAGGCTGCCAGCA                                                    <  2:328757/149‑1
                                                                                           GCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCA                                                    <  1:309366/149‑1
                                                                                                    CAATAACCATGAACGGCTTGAAGACCTGATTGGCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGA                                           <  1:332329/149‑1
                                                                                                         CCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACC                                      <  1:298220/149‑1
                                                                                                          CCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCG                                     >  1:334662/1‑149
                                                                                                           CAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTATTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGC                                    <  1:14434/149‑1
                                                                                                                                             CAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTCAACATG  >  1:233129/1‑149
                                                                                                                                                                                                                                                                                                  
TAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_vch_pgi/2393278‑2393421
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTCAACATG  >  NC_000913_3_vch_pgi/2393435‑2393580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.