| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_vch_pgi | 2,393,422 | Δ13 bp | coding (1613‑1625/1842 nt) | nuoL ← | NADH:ubiquinone oxidoreductase, membrane subunit L |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_vch_pgi | 2393422 | 2393434 | 13 | 25 [0] | [0] 25 | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 2393421 | 0 (0.000) | 25 (1.310) | 24/288 | 0.0 | 100% | coding (1626/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| ? | NC_000913_3_vch_pgi | 2393435 = | 0 (0.000) | coding (1612/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L | |||||
TAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTC > NC_000913_3_vch_pgi/2393278‑2393567 | aagCCGTTCTCACCTAACAGCAGACCTGTACCTGCAAAGCGCGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTAAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttg < 2:60936‑M1/148‑6 (MQ=255) ttCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgt < 2:113536‑M1/144‑7 (MQ=255) ttCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgt > 1:113536‑M1/1‑138 (MQ=255) tACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATGGCGTTTCAGCAACCAGGCAATACCCAGGGACGGCTCGACGAACACTATGTCCTCCAGCCCAcgttgtaccagccggtgcccagccgccggcgtg > 2:339407‑M1/1‑116 (MQ=255) gCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgca > 1:219666‑M1/1‑111 (MQ=255) aaaGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcact > 2:298220‑M1/1‑109 (MQ=255) aaaGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcact < 1:157656‑M1/149‑41 (MQ=255) gCGGGAAAGGACATCCGGTATGTTCATCAGTGAGGTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGATCGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgtt < 2:34957‑M1/149‑44 (MQ=255) aaaGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcga < 1:16654‑M1/149‑49 (MQ=255) aaGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccgccgcactgttggcgat > 1:157238‑M1/1‑100 (MQ=255) gACAGCCGGGATGTTCATCATTGAGTTCGGCGGATCGCGCTTAAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccgggggtgcaggatacggcccggcgcactgttggcgatgga < 1:81810‑M1/149‑53 (MQ=255) aaaaccgggaTGTTCATCATTGAGGTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggag < 2:241600‑M1/145‑54 (MQ=255) gCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAATGTCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggtggtc > 1:288162‑M1/1‑93 (MQ=255) ccGGGATTTTCATCATTGAGTTCAGCGGATGGCGCGTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAGCACTTTGTCATACAGCCAGcgttgtgccaccaggtgccccgcagacggcccggcgccctgttggcgccggacgtcg > 2:167056‑M1/1‑92 (MQ=255) atTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagccaccggcccggcgccccctctccgctggaggtcacccgagtacctttc > 2:267376‑M1/1‑78 (MQ=255) gCGGATCGCGGTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccaca < 1:267376‑M1/149‑82 (MQ=255) gTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctg < 1:284502‑M1/149‑91 (MQ=255) tttCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgc < 1:91604‑M1/149‑92 (MQ=255) gCAACCAGGCAATACCCAGGAGCGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtaacctgcgttggtttacccagccacagccaggctgccagca < 2:328757‑M1/149‑97 (MQ=255) gCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagca < 1:309366‑M1/149‑97 (MQ=255) cAATAACCATGAACGGCTTGAAGACCTGATTGGCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccga < 1:332329‑M1/149‑106 (MQ=255) cccAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccgaccacc < 1:298220‑M1/149‑111 (MQ=255) ccAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccgaccaccg > 1:334662‑M1/1‑38 (MQ=255) cAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactattggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccgaccaccgc < 1:14434‑M1/149‑113 (MQ=255) cagcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccgaccaccgcgaccacgccagaggtaatttccagggtcaacatg > 1:233129‑M1/1‑3 (MQ=255) | TAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTC > NC_000913_3_vch_pgi/2393278‑2393567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |