Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_vch_pgi 2,393,422 Δ13 bp coding (1613‑1625/1842 nt) nuoL ← NADH:ubiquinone oxidoreductase, membrane subunit L

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_vch_pgi 2393422 2393434 13 25 [0] [0] 25 nuoL NADH:ubiquinone oxidoreductase, membrane subunit L

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_vch_pgi = 23934210 (0.000)25 (1.310) 24/288 0.0 100% coding (1626/1842 nt) nuoL NADH:ubiquinone oxidoreductase, membrane subunit L
?NC_000913_3_vch_pgi 2393435 = 0 (0.000)coding (1612/1842 nt) nuoL NADH:ubiquinone oxidoreductase, membrane subunit L

TTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTCAACATG  >  NC_000913_3_vch_pgi/2393291‑2393580
                                                                                                                                                |                                                                                                                                                 
aagccgttctcacctaacagcagacctgtacctgcaaagcgcgaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttaagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTg                                                                                                                                               <  2:60936‑M2/5‑1 (MQ=255)
      ttctcacttaacagcagacctttacctgcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGt                                                                                                                                              <  2:113536‑M2/6‑1 (MQ=255)
      ttctcacttaacagcagacctttacctgcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGt                                                                                                                                              >  1:113536‑M2/139‑144 (MQ=255)
                            tacctgcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatggcgtttcagcaaccaggcaatacccagggacggctcgacgaacactatgtcctccagcccaCGTTGTACCAGCCGGTGCCCAGCCGCcggcgtg                                                                                                                   >  2:339407‑M2/117‑146 (MQ=255)
                                 gcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCa                                                                                                              >  1:219666‑M2/112‑149 (MQ=255)
                                   aaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACt                                                                                                            >  2:298220‑M2/110‑149 (MQ=255)
                                   aaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACt                                                                                                            <  1:157656‑M2/40‑1 (MQ=255)
                                      gcgggaaaggacatccggtatgttcatcagtgaggtcagcggatcgcgtttcagcaaccaggcaatacccaggatcggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGtt                                                                                                         <  2:34957‑M2/43‑1 (MQ=255)
                                           aaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGa                                                                                                    <  1:16654‑M2/48‑1 (MQ=255)
                                            aaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGCCGCACTGTTGGCGAt                                                                                                   >  1:157238‑M2/101‑149 (MQ=255)
                                               gacagccgggatgttcatcattgagttcggcggatcgcgcttaagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCGGGGGTGCAGGATACGGCCCGGCGCACTGTTGGCGATGGa                                                                                                <  1:81810‑M2/52‑1 (MQ=255)
                                                aaaaccgggatgttcatcattgaggtcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAg                                                                                               <  2:241600‑M2/53‑1 (MQ=255)
                                                   gccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaatgtcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGTGGTc                                                                                            >  1:288162‑M2/94‑149 (MQ=255)
                                                    ccgggattttcatcattgagttcagcggatggcgcgtcagcaaccaggcaatacccaggaacggcttgacgagcactttgtcatacagccagCGTTGTGCCACCAGGTGCCCCGCAGACGGCCCGGCGCCCTGTTGGCGCCGGACGtcg                                                                                           >  2:167056‑M2/93‑148 (MQ=255)
                                                                  attgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCCACCGGCCCGGCGCCCCCTCTCCGCTGGAGGTCACCCGAGTACctttc                                                                             >  2:267376‑M2/79‑148 (MQ=255)
                                                                            gcggatcgcggttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCcagccaca                                                                   <  1:267376‑M2/81‑1 (MQ=255)
                                                                                     gtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTg                                                          <  1:284502‑M2/90‑1 (MQ=255)
                                                                                      tttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGc                                                         <  1:91604‑M2/91‑1 (MQ=255)
                                                                                           gcaaccaggcaatacccaggagcggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTAACCTGCGTTGGTTTACCCAGCCACAGCCAGGCTGCcagca                                                    <  2:328757‑M2/96‑1 (MQ=255)
                                                                                           gcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCcagca                                                    <  1:309366‑M2/96‑1 (MQ=255)
                                                                                                    caataaccatgaacggcttgaagacctgattggcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGa                                           <  1:332329‑M2/105‑1 (MQ=255)
                                                                                                         cccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGaccacc                                      <  1:298220‑M2/110‑1 (MQ=255)
                                                                                                          ccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACcg                                     >  1:334662‑M2/39‑149 (MQ=255)
                                                                                                           caggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTATTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACcgc                                    <  1:14434‑M2/112‑1 (MQ=255)
                                                                                                                                             cagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTCAACATg  >  1:233129‑M2/4‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                 
TTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTCAACATG  >  NC_000913_3_vch_pgi/2393291‑2393580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.