New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	= 1174106	31 (1.610)	4 (0.210)	4/282	2.1	12.7%	coding (1060/1074 nt)	ycfT	inner membrane protein
	?	NC_000913_3_vch_pgi	= 1174164	25 (1.330)					coding (1002/1074 nt)	ycfT	inner membrane protein
Rejected: Frequency below/above cutoff threshold.

GCATAACGGTTGTCAGATTCTCGTTAGGATATGCCTCAACATATGGGGGCATATCTCTGATAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAACAAACTGACAAAGGGATAAACCAGCAGGAGTGTCAGTTCGACTTG  >  NC_000913_3_vch_pgi/1173961‑1174247                                                                                                                                                  |                                                                                                                                              gCATAACGGTTGTCAGATTCTCGTTAGGATATGCCTCAACATATGGGGGCATATCTCTGATAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTACCTGAc                                                                                                                                            >  2:171518/1‑149 (MQ=255)         gTTGTCAGATTCTCGTTAGGATATGCTGCAACATAGGGGGGCATATTTCTGATAAGCAATGCTGTTCATTATCCGTAAGCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCgg                                                                                                                                    <  2:119822/149‑1 (MQ=255)            gTCAGATTCTCGTTAGGATATGCCTCAACATATGGGGGCATATCTTTGATAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCa                                                                                                                                 <  2:112289/149‑1 (MQ=255)            gTCAGATTCTCGTTAGGATATGCCTCAACATATGGGGGCATATCTCTGATAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTGGTAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCa                                                                                                                                 <  1:266166/149‑1 (MQ=255)                          aGGATATGCCTCAACATATGGGGGCATATCTCTGATAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGgag                                                                                                                   <  2:44823/149‑1 (MQ=255)                                tGCCTCAACATATGGTCGTATATCCCTTATAAGCAATGCTGTTCATTATCCGTACTCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGTGGCGATGGCTTAGCGGGAGTAACTGACGTCAGCGGGCAGTGAAGGCGGGGAGaacaac                                                                                                             <  2:12713/149‑1 (MQ=255)                                   cTCAACATATGGGGGCATATCTCTGATAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGa                                                                                                          >  1:307367/1‑149 (MQ=255)                                    tCAACATATGGGGGCATATCTCTGATAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGAGAAGGCGGGGAGAACAACAGAt                                                                                                         >  2:161751/1‑149 (MQ=255)                                                     atCTCTGATAAGCAATGCTGTTCATTATCCGTAATCGCCATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTCACTGACGGCAGCGGGCAGTGAAGGCGGGCACAACAACAGATCGCTGAATACCCGcgtt                                                                                        >  2:310223/1‑146 (MQ=255)                                                      tctcTGATAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTttcacagcgtgcagtcagcgatctgttgttctccccgccttcactgcccgctgccg                                                                                       >  1:281971‑M1/1‑93 (MQ=255)                                                             tAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGttt                                                                                >  2:14560/1‑149 (MQ=255)                                                             tAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGttt                                                                                >  2:13376/1‑149 (MQ=255)                                                                gCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTttcacagcgtgcattcagcgatctgttgttctccccgccttcactgcccgctgccgtcagttactc                                                                             >  1:254684‑M1/1‑83 (MQ=255)                                                                gCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCt                                                                             <  1:206337/149‑1 (MQ=255)                                                                gCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCt                                                                             >  1:157846/1‑149 (MQ=255)                                                                   aTGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTAc                                                                          >  1:256150/1‑149 (MQ=255)                                                                      cggtgcATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCGGGGGCGATGGCTTAGCGTGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAg                                                                       <  2:20301/144‑1 (MQ=255)                                                                         ttCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTttcacagcgtgcattcagcgatctgttgttctccccgccttcactgcccgctgccgtcagttactcccgctaagc                                                                    <  2:254684‑M1/149‑76 (MQ=255)                                                                         ttCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCaa                                                                    >  1:34005/1‑149 (MQ=255)                                                                         ttCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCaa                                                                    <  2:307367/149‑1 (MQ=255)                                                                             ttATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTttcacagcgtgcattcagcgatctgttgttctccccgccttcactgcccgctgccgtcagttactcccgctaagccatc                                                                <  2:281971‑M1/149‑80 (MQ=255)                                                                             ttATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGcgc                                                                >  2:81824/1‑147 (MQ=255)                                                                                      acgcaCATGGTTTAGCAAAGCAAATCCCCGCGGCTGGGGGGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTa                                                       <  2:210244/145‑1 (MQ=255)                                                                                        agACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTCAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACa                                                     <  1:90785/148‑1 (MQ=255)                                                                                          aCATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCGGTGGAGGCGGGGAGAAAAACAGATCGCTGAATGCACGCGGTGAAAGTTTTCTTACCAGCAAGACCGCAACAGTGCAGa                                                   >  1:29089/1‑149 (MQ=255)                                                                                           cATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTTCAGGCGGGGAGAACAACAGATCGCTGAATGCACCCAGTGAAAGTGTTCTTACCAGCAAGCCCACACCAGTACAGAt                                                  >  2:329938/1‑149 (MQ=255)                                                                                              ggTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGaa                                               <  2:185562/149‑1 (MQ=255)                                                                                              ggTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGaa                                               <  1:13376/149‑1 (MQ=255)                                                                                                      aaaTTGGATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAACAAACTGa                                       <  1:155707/149‑1 (MQ=255)                                                                                                           gAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCTCCCTGTGACCGTTCACGGATGAGCAAGCCCGCAACAGTACAGATGAACAAACTGACAAAg                                  <  1:335778/149‑1 (MQ=255)                                                                                                            aaTCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAACAAACTGACAAAgg                                 >  1:269771/1‑149 (MQ=255)                                                                                                            aaTCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAACAAACTGACAAAgg                                 <  1:175889/149‑1 (MQ=255)                                                                                                                  cccGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAACAAACTGACAAAGGGATaaa                           <  2:34005/149‑1 (MQ=255)                                                                                                                              gATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAagttactcccgctaagccatcgccccagccggggcgattcaatttgctaaaccatgtcgattacggataa               <  2:281971‑M2/149‑71 (MQ=255)                                                                                                                                  gCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAagttactcccgctaagccatcgccccagccggggcgattcaatttgctaaaccatgtcgattacggataatgaa           <  2:254684‑M2/149‑75 (MQ=255)                                                                                                                                    ttAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGAACGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGAACAGATGAACAAACTGACAAAGGCATAAACAAGCAGGACAGTAAGtt         >  2:261346/1‑149 (MQ=255)                                                                                                                                       gCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAGTCCATATCCTGATGGATAAACCAGCAGGAGTGTCAGTTCGa      <  1:81824/149‑1 (MQ=255)                                                                                                                                           gAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAagttactcccgctaagccatcgccccagccggggcgattcaatttgctaaaccatgtcgattacggataatgaacagcattgc  >  1:254684‑M2/1‑66 (MQ=255)                                                                                                                                                  |                                                                                                                                              GCATAACGGTTGTCAGATTCTCGTTAGGATATGCCTCAACATATGGGGGCATATCTCTGATAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAACAAACTGACAAAGGGATAAACCAGCAGGAGTGTCAGTTCGACTTG  >  NC_000913_3_vch_pgi/1173961‑1174247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.