New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	= 1174106	31 (1.610)	4 (0.210)	4/282	2.1	12.7%	coding (1060/1074 nt)	ycfT	inner membrane protein
	?	NC_000913_3_vch_pgi	= 1174164	25 (1.330)					coding (1002/1074 nt)	ycfT	inner membrane protein
Rejected: Frequency below/above cutoff threshold.

TAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAACAAACTGACAAAGGGATAAACCAGCAGGAGTGTCAGTTCGACTTGCGGCGACCAGCGTGCTGCGTTCATTTGCGCAAGCAGAGTTAAGC  >  NC_000913_3_vch_pgi/1174021‑1174291                                                                                                                                                |                                                                                                                                tAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGttt                                                                                                                            >  2:14560/1‑149 (MQ=255) tAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGttt                                                                                                                            >  2:13376/1‑149 (MQ=255)    gCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCt                                                                                                                         >  1:157846/1‑149 (MQ=255)    gCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCt                                                                                                                         <  1:206337/149‑1 (MQ=255)       aTGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTAc                                                                                                                      >  1:256150/1‑149 (MQ=255)          cggtgcATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCGGGGGCGATGGCTTAGCGTGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAg                                                                                                                   <  2:20301/144‑1 (MQ=255)             ttCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCaa                                                                                                                <  2:307367/149‑1 (MQ=255)             ttCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCaa                                                                                                                >  1:34005/1‑149 (MQ=255)                 ttATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGcgc                                                                                                            >  2:81824/1‑147 (MQ=255)                          acgcaCATGGTTTAGCAAAGCAAATCCCCGCGGCTGGGGGGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTa                                                                                                   <  2:210244/145‑1 (MQ=255)                            agACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTCAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACa                                                                                                 <  1:90785/148‑1 (MQ=255)                              aCATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCGGTGGAGGCGGGGAGAAAAACAGATCGCTGAATGCACGCGGTGAAAGTTTTCTTACCAGCAAGACCGCAACAGTGCAGa                                                                                               >  1:29089/1‑149 (MQ=255)                               cATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTTCAGGCGGGGAGAACAACAGATCGCTGAATGCACCCAGTGAAAGTGTTCTTACCAGCAAGCCCACACCAGTACAGAt                                                                                              >  2:329938/1‑149 (MQ=255)                                  ggTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGaa                                                                                           <  1:13376/149‑1 (MQ=255)                                  ggTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGaa                                                                                           <  2:185562/149‑1 (MQ=255)                                          aaaTTGGATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAACAAACTGa                                                                                   <  1:155707/149‑1 (MQ=255)                                               gAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCTCCCTGTGACCGTTCACGGATGAGCAAGCCCGCAACAGTACAGATGAACAAACTGACAAAg                                                                              <  1:335778/149‑1 (MQ=255)                                                aaTCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAACAAACTGACAAAgg                                                                             >  1:269771/1‑149 (MQ=255)                                                aaTCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAACAAACTGACAAAgg                                                                             <  1:175889/149‑1 (MQ=255)                                                      cccGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAACAAACTGACAAAGGGATaaa                                                                       <  2:34005/149‑1 (MQ=255)                                                                  gATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAagttactcccgctaagccatcgccccagccggggcgattcaatttgctaaaccatgtcgattacggataa                                                           <  2:281971‑M2/149‑71 (MQ=255)                                                                      gCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAagttactcccgctaagccatcgccccagccggggcgattcaatttgctaaaccatgtcgattacggataatgaa                                                       <  2:254684‑M2/149‑75 (MQ=255)                                                                        ttAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGAACGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGAACAGATGAACAAACTGACAAAGGCATAAACAAGCAGGACAGTAAGtt                                                     >  2:261346/1‑149 (MQ=255)                                                                           gCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAGTCCATATCCTGATGGATAAACCAGCAGGAGTGTCAGTTCGa                                                  <  1:81824/149‑1 (MQ=255)                                                                               gAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAagttactcccgctaagccatcgccccagccggggcgattcaatttgctaaaccatgtcgattacggataatgaacagcattgc                                              >  1:254684‑M2/1‑66 (MQ=255)                                                                                         cGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGACTGCACGCTGTGAAagttactcccgctaagccatcgccccagccggggcgattcaatttgctaaaccatgtcgattacggataatgaacagcattgcttatcagaga                                    >  1:281971‑M2/1‑56 (MQ=255)                                                                                                 ggCAGGGAAGGCAGGGAGAACAACAGCTCGCCGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTAAAGATGAACAAACTGACAAAGGGATAAACCAGCAGGAGTGTCAGTTCGACTTGCGGCGACCAGCGtgctgc                            <  1:19711/149‑1 (MQ=255)                                                                                                                      aacaGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAACAAACTGACAAAGGGATAAACCAGCAGGAGTGTCAGTTCGACTTGCGGCGACCAGCGTGCTGCGTTCATTTGGGCAAGCAGAGt       >  2:242886/1‑149 (MQ=255)                                                                                                                           aTCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAACAAACTGACAAAGGGATAAACCAGCAGGAGTGTCAGTTCGACTTGCGGCGACCAGCGTGCTGCGTTCATTTGCGCAAGCAGAGGTAAGc  >  1:114807/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                TAAGCAATGCTGTTCATTATCCGTAATCGACATGGTTTAGCAAATTGAATCGCCCCGGCTGGGGCGATGGCTTAGCGGGAGTAACTGACGGCAGCGGGCAGTGAAGGCGGGGAGAACAACAGATCGCTGAATGCACGCTGTGAAAGTTTTCTTACCAGCAAGCCCGCAACAGTACAGATGAACAAACTGACAAAGGGATAAACCAGCAGGAGTGTCAGTTCGACTTGCGGCGACCAGCGTGCTGCGTTCATTTGCGCAAGCAGAGTTAAGC  >  NC_000913_3_vch_pgi/1174021‑1174291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.