New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	= 3510605	14 (0.730)	3 (0.160)	3/286	2.6	17.8%	coding (372/1164 nt)	yhfX	putative pyridoxal 5'‑phosphate binding protein
	?	NC_000913_3_vch_pgi	= 3510636	14 (0.740)					coding (341/1164 nt)	yhfX	putative pyridoxal 5'‑phosphate binding protein
Rejected: Frequency below/above cutoff threshold.

TTGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGTCGGTGCCCTGTTCAACGGCGTCAGCAACCTGATGACAAGGGATTTGTACCAGATGCCCCTGATGCGCCACAGGCAAACCAGCGCGGCGCATGACTCGCGCCTCTTTGTAATCCACCGCCACAATGCCGCTGTAGCCTAA  >  NC_000913_3_vch_pgi/3510468‑3510751                                                                                                                                          |                                                                                                                                                   ttGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGTCGGt                                                                                                                                         >  1:3406/1‑149 (MQ=255)            aCCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAGGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGCGTAAACACGGTGATGACGTCGGTGCCCTCTTCaa                                                                                                                              >  2:313104/1‑149 (MQ=255)                        gcgcggaTAAAGAAAATCATCGGCGCGATAAACTTTAAGCAGCACAGACTGGAGTCGCCCGGCCTTCACCGCCGCCGCAGAATCTTCCTGCGCTTTGTCGAGAGTAAACACGGTGatgacgccgttgaacagggcaccgacgtcatcac                                                                                                                  <  2:68648‑M1/146‑35 (MQ=255)                             gATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGTCGGTGCCCTGTTCAACGGCGTCAGCAACCtga                                                                                                             >  1:38760/1‑149 (MQ=255)                                   gAAAATCATCGTCGCTATAAACTTTAAACAGCACAGACTGGATTCGCCCGACCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGCAGACGTCGGTGCCCTGTTCAACGGCGGACGCAACCAGGTAACaa                                                                                                       >  2:97100/1‑149 (MQ=255)                                          atcGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGTCGGTGCCCTGTTCAACGGCGTCAGCAACCTGATGACAAGGGAttt                                                                                                <  1:46104/149‑1 (MQ=255)                                           tcgtcgCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGctgacgccgttgaacagggcaccgacgtcatcaccgtgtttactctcg                                                                                                    >  1:17507‑M1/1‑96 (MQ=255)                                           tcgtcgCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGctgacgccgttgaacagggcaccgacgtcatcaccgtgtttactctcg                                                                                                    <  2:17507‑M1/144‑49 (MQ=255)                                                        cTTTGAGCAGCACAGACGTGATTGGCCCGGTCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTAGAGAGTACACACTGTGATGACGTGGGTGCCCTGTTGAACGGCGCCATCAACCTGATGACAAGGGATTTGTACCAGATGcccc                                                                                  <  2:80740/149‑1 (MQ=255)                                                        cTTTAATCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGTCGGTGTCCTGTTCAACGGCGTCAGCAACCTGATGACAAGGGATTTGTACCAGATGcccc                                                                                  <  1:222114/149‑1 (MQ=255)                                                                                gCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGACGAATGAAAACCCGTTTTTCTTGTCTATTCCATGGTCAACGGCGGCAGCAACCTGATGACAAGGGATTTGTACCACATGCCCCTCATGCGCCACAGGCAAACCAgcg                                                          >  2:72022/1‑149 (MQ=255)                                                                                        ttCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGTCGGTGCCCTGTTCAACGGCGTCAGCAACCTGATGACAAGGGATTTGTACCAGATGCCCCTGATGCGCCACAg                                                                     <  2:114665/130‑1 (MQ=255)                                                                                        ttCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGTCGGTGCCCTGTTCAACGGCGTCAGCAACCTGATGACAAGGGATTTGTACCAGATGCCCCTGATGCGCCACAg                                                                     >  1:114646/1‑130 (MQ=255)                                                                                        ttCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGTCGGTGCCCTGTTCAACGGCGTCAGCAACCTGATGACAAGGGATTTGTACCAGATGCCCCTGATGCGCCACAg                                                                     <  2:114646/130‑1 (MQ=255)                                                                                        ttCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGTCGGTGCCCTGTTCAACGGCGTCAGCAACCTGATGACAAGGGATTTGTACCAGATGCCCCTGATGCGCCACAg                                                                     >  1:114665/1‑130 (MQ=255)                                                                                        ttCACCGCCGCCGCAGAAACTTCAACCGCTTTGTCGAGAGTAAACACGGTGATGACGTCGGTGCCCCGTTCCACGGCGTCAGCAACCTTATGACCAGGGAGTTGTACCAGAGGCCCCTGACGCGCCACAGCCAAACCATCGCGGCACAt                                                  >  2:143282/1‑149 (MQ=255)                                                                                                                        gTCGAGAGTAAACACGGTGATGACGTCGGTGCCCTGATCAACGGCGTCAGCAACCTGATGACAAGGGATTTGTACCAGATGCCCCCGATGCGCCACAGGCAAACCAGCGCGGCGCATGACTCGCGCCTCTTTGTAATCCACCGCCACaa                  >  1:31353/1‑149 (MQ=255)                                                                                                                          cGAGAGTAAACACGGTGATGACGTCGGTGCCCTGTTCAACGGCGTCAGcaccgtgtttactctcgacaaagcgcgggaagtttctgcggcggcggtgaaggccgggcgaatccagtctgtgctgcttaaagtttatagcgacga                     <  2:17507‑M2/144‑97 (MQ=255)                                                                                                                          cGAGAGTAAACACGGTGATGACGTCGGTGCCCTGTTCAACGGCGTCAGcaccgtgtttactctcgacaaagcgcgggaagtttctgcggcggcggtgaaggccgggcgaatccagtctgtgctgcttaaagtttatagcgacga                     >  1:17507‑M2/1‑48 (MQ=255)                                                                                                                                        gTGATGACGTCGGTGCCCTGTTCAACGGCGTCATcaccgtgtttactctcgacaaagcgcaggaagattctgcggcggcggtgaaggccgggcgactccagtctgtgctgcttaaagtttatcgcgccgatgattttctttatccgcgc  <  2:68648‑M2/149‑116 (MQ=255)                                                                                                                                          |                                                                                                                                                   TTGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGTCGGTGCCCTGTTCAACGGCGTCAGCAACCTGATGACAAGGGATTTGTACCAGATGCCCCTGATGCGCCACAGGCAAACCAGCGCGGCGCATGACTCGCGCCTCTTTGTAATCCACCGCCACAATGCCGCTGTAGCCTAA  >  NC_000913_3_vch_pgi/3510468‑3510751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.