mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 28.6% | 146.6 / 65.0 | 105 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 42 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 4040683 | 124 (1.840) | 22 (0.330) | 13/276 | 5.4 | 19.4% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_hsa_tpiA | = 4213144 | 60 (0.910) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4542672 | 44 (0.650) | 10 (0.160) | 10/262 | 6.1 | 16.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | = 4542968 | 60 (0.950) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3426836 = | NA (NA) | 9 (0.140) | 8/266 | 7.0 | NA | intergenic (‑53/+122) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala |
| ? | NC_000913_3_hsa_tpiA | 3426854 = | NA (NA) | intergenic (‑71/+104) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4093097 | 127 (1.890) | 8 (0.120) | 7/268 | 7.5 | 6.2% | intergenic (‑274/+27) | frvA/rhaM | putative enzyme IIA component of PTS/L‑rhamnose mutarotase |
| ? | NC_000913_3_hsa_tpiA | = 4093109 | 120 (1.860) | intergenic (‑286/+15) | frvA/rhaM | putative enzyme IIA component of PTS/L‑rhamnose mutarotase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3946824 | 17 (0.250) | 9 (0.140) | 7/276 | 7.7 | 11.3% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913_3_hsa_tpiA | = 4040681 | 124 (1.870) | intergenic (+45/+225) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3423665 = | NA (NA) | 9 (0.140) | 7/276 | 7.7 | 6.9% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_hsa_tpiA | = 4040683 | 124 (1.840) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2673776 = | NA (NA) | 7 (0.110) | 6/262 | 7.9 | NA | noncoding (1/34 nt) | REP185 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP185 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 2673806 = | NA (NA) | noncoding (31/34 nt) | REP185 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP185 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 944904 = | 70 (1.040) | 6 (0.090) | 6/264 | 7.9 | 8.6% | intergenic (+8/+27) | dmsC/ycaC | dimethyl sulfoxide reductase, anaerobic, subunit C/putative isochorismatase family hydrolase |
| ? | NC_000913_3_hsa_tpiA | 944926 = | 62 (0.980) | intergenic (+30/+5) | dmsC/ycaC | dimethyl sulfoxide reductase, anaerobic, subunit C/putative isochorismatase family hydrolase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3943624 | NA (NA) | 6 (0.090) | 6/266 | 8.0 | 8.5% | intergenic (+114/‑80) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 4037457 | 68 (1.010) | intergenic (+122/‑62) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3681976 = | 74 (1.100) | 6 (0.090) | 6/272 | 8.1 | 8.3% | intergenic (‑36/+185) | yhjJ/dctA | putative periplasmic M16 family chaperone/C4‑dicarboxylic acid, orotate and citrate transporter |
| ? | NC_000913_3_hsa_tpiA | 3681996 = | 60 (0.920) | intergenic (‑56/+165) | yhjJ/dctA | putative periplasmic M16 family chaperone/C4‑dicarboxylic acid, orotate and citrate transporter | |||||