mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 25.0% | 132.0 / 44.3 | 84 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 143 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 349969 | NA (NA) | 5 (0.190) +59 bp |
4/162 | 3.9 | NA | noncoding (365/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 349972 | NA (NA) | intergenic (+400/‑40) | prpB/prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4094449 = | 129 (2.790) | 8 (0.180) | 7/266 | 4.8 | 6.2% | noncoding (134/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 4094481 = | 121 (2.750) | noncoding (166/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4094357 = | NA (NA) | 8 (0.180) | 7/266 | 4.8 | 6.2% | noncoding (42/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 4094481 = | 121 (2.750) | noncoding (166/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3944978 | NA (NA) | 8 (0.180) | 7/268 | 4.8 | 26.7% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 4038811 | 23 (0.500) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 227052 | 25 (0.540) | 8 (0.180) | 7/268 | 4.8 | 25.1% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 225281 | NA (NA) | 7 (0.160) | 7/270 | 4.8 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3424227 | NA (NA) | 18 (0.390) | 7/276 | 4.9 | NA | noncoding (2557/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_hsa_tpiA | = 3424232 | NA (NA) | noncoding (2552/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 349594 = | NA (NA) | 3 (0.100) +48 bp |
3/184 | 5.0 | 8.5% | intergenic (+22/‑418) | prpB/prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| ? | NC_000913_3_hsa_tpiA | 349882 = | 49 (1.060) | noncoding (278/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 349594 = | NA (NA) | 3 (0.100) +48 bp |
3/184 | 5.0 | 8.4% | intergenic (+22/‑418) | prpB/prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| ? | NC_000913_3_hsa_tpiA | 349789 = | 50 (1.080) | noncoding (185/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4583152 | 61 (1.320) | 6 (0.140) | 6/268 | 5.2 | 8.9% | intergenic (‑122/+79) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913_3_hsa_tpiA | = 4583172 | 64 (1.450) | intergenic (‑142/+59) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||