| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 3159421 | 18 (0.730) | 4 (0.170) | 4/272 | 2.8 | 17.7% | coding (1726/2220 nt) | ygiQ | Radical SAM superfamily protein |
| ? | NC_000913_3_hsa_tpiA | = 3159442 | 20 (0.850) | coding (1705/2220 nt) | ygiQ | Radical SAM superfamily protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCGCTCTTATAACCAATCTTCGCCAGCGGGTTTTTCCCGGTGTAATACATGGTGGTTGAGTTCGCCAGCGGCGACGGATAGAAGTTCTGCACCTGGTCGAGGCGGAAGCGGTGCTTTTTCAGCCACAGCGCCAGATTCACCATATCTTCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_hsa_tpiA/3159269‑3159421‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcatcTCCGCGCACCCCGGTACGCGTGATGAAGATATGGTGAATCTGGCGCTGTGGCTGAAAAAGCACCGCTTCCGCCTCGACCAGGTGCAGAACTTCTATCCGTCGCCGCTGGCGAACTCAACCACCATGTATTACACCGGGAAAAACC < NC_000913_3_hsa_tpiA/3159442‑3159298 TTCGCTCTTATAACCAATCTTCGCCAGCGGGTTTTTCCCGGTGTAATACATGGTGGTTGAGTTCGCCAGCGGCGGCGGATAGAAGTTCTGCACCTGGTCGAGGCGGAAGCGGTGCTTTTTCAGCCACAGCGCCAGATTCACCATATCTT > 1:113409/1‑149TTCGCTCTTATAACCAATCTTCGCCAGCGGGTTTTTCCCGGTGTAATACATGGTGGTTGAGTTCGCCAGCGGCGACGGATAGAAGTTCTGCACCTGGTCGAGGCGGAAGCGGTGCTTTTTCAGCCACAGCGCCAGATTCACCATATCTT > 2:27624/1‑149 TCGCTCTTACAACCAATCTTCGCCAGCGGGTTTTTCCCGGTGTAATACATGGTGGTTGAGTTCGCCAGCGGCGACGGATAGAAGTTCTGCACCTGGTCGAGGCGGAAGCGGTGCTTTTTCAGCCACAGCGCCAGATTCACCATATCTTC < 1:85615/149‑1 CGCTCTTATAACCAATCTTCGCCAGCGGGTTTTTCCCGGTGTAATACATGGTGGTTGAGTTCGCCAGCGGCGACGGATAGAAGTTCTGCACCTGGTCGAGGCGGAAGCGGTGCTTTTTCAGCCACAGCGCCAGATTCACCATATCTTCA < 1:365708/149‑1 AGTTCGCCAGCGGCGACGGATAGAAGTTCTGCACCTGGTCGAGGCGGAAGCGGTGCTTTTTCAGCCACAGCGCCAGATTCACCATATCTTCATCTCCGCGCACCCCGGTACGCGTGATGAAGATAT > 1:148038/1‑126 AGTTCGCCAGCGGCGACGGATAGAAGTTCTGCACCTGGTCGAGGCGGAAGCGGTGCTTTTTCAGCCACAGCGCCAGATTCACCATATCTTCATCTCCGCGCACCCCGGTACGCGTGATGAAGATAT < 2:148038/126‑1 GTTCGCCAGCGGCGACGGATAGAAGTTCTGCACCTGGTCGAGGCGGAAGCGGTGCTTTTTCAGCCACAGCGCCAGATTCACCATATCTTCATC‑ACGCGCACCCCGGTACGCGT > 1:294117/1‑113 GTTCGCCAGCGGCGACGGATAGAAGTTCTGCACCTGGTCGAGGCGGAAGCGGTGCTTTTTCAGCCACAGCGCCAGATTCACCATATCTTCATC‑ACGCGCACCCCGGTACGCGT < 2:294117/113‑1 tcTCATCTCCGCGCACCCCGGTACGCGTGATGAAGATATGGTGAATCTGGCGCTGTGGCTGAAAAAGCACCGCTTCCGCCTCGACCAGGTGCAGAACTTCTATCCGTCGCCGCTGGCGAACTCAACCACCATGTATTACACCGGGAAAA < 1:143400/147‑1 CATCTCCGCGCACCCCGGTACGCGTGATGAAGATATGGTGAATCTGGCGCTGTGGCTGAAAAAGCACCGCTTCCGCCTCGACCAGGTGCAGCACTTCTATCCGTCGCCGCTGGCCAACTCAACCACCATGTATTACACCGGGAAAAACC > 1:376411/1‑149 TTCGCTCTTATAACCAATCTTCGCCAGCGGGTTTTTCCCGGTGTAATACATGGTGGTTGAGTTCGCCAGCGGCGACGGATAGAAGTTCTGCACCTGGTCGAGGCGGAAGCGGTGCTTTTTCAGCCACAGCGCCAGATTCACCATATCTTCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_hsa_tpiA/3159269‑3159421‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcatcTCCGCGCACCCCGGTACGCGTGATGAAGATATGGTGAATCTGGCGCTGTGGCTGAAAAAGCACCGCTTCCGCCTCGACCAGGTGCAGAACTTCTATCCGTCGCCGCTGGCGAACTCAACCACCATGTATTACACCGGGAAAAACC < NC_000913_3_hsa_tpiA/3159442‑3159298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |