New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1028374	NA (NA)	6 (0.200)	5/252	3.5	NA	noncoding (9/24 nt)	REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_hsa_tpiA	= 1028380	NA (NA)					noncoding (15/24 nt)	REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CTATTGCCATTGGCGCGAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/1028214‑1028374 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatccccggaaggTTTTTGCCTTCCGGGGATTTTTTATTTGGCCAGGCCCAGGCGAGGGATCTCAATAGCCGGGCAGCGATCCATCACCACATTTAACCCGGCATCCCGTGCCAGTACTGCCGCTTGCTCATTAATCACCCCCAGTTGCATCCAGAGA  <  NC_000913_3_hsa_tpiA/1028380‑1028236                                                                                                                                                                                                                                                                                                                    CTATTGCCATTGGCGCGAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAA                                                                                                                                                               <  2:352585/149‑1                           TGGATGTCAGTGGGGGTGATTAATGAGCAAGCGGCAGTACTGTTACGGGATGGCGTGTTAAATGTGGTGATGGATCGCTGTCCTGCGATTGAGATTCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGTTTTTGCCTTCCGG                                                                                                                                     <  2:16922/149‑1                           TGGATGCAACTGGGGGTGATTAACGAGCAAGCGGCAGTCCTGGCACGGGAGGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTCAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGTTTTTGCCTTCCGG                                                                                                                                     <  1:202874/149‑1                            GGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGTTTTTGCCTTCCGGG                                                                                                                                    <  2:56120/149‑1                                   ACTGCGGGTGAGTAATTAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGGGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGTTTTTGCCTTCCGGGGATTTTT                                                                                                                             <  1:77442/149‑1                                                                                                            CCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGTTTTTGCCTTCCGGGGATTTTTTATTT                                                                                                                        <  1:33014/81‑1                                                                                                            CCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGTTTTTGCCTTCCGGGGATTTTTTATTT                                                                                                                        >  2:33014/1‑81                                                                                                                                                       TCCCCGGAAGGTTTTTGCCTTCCGGGGATTTTTTATTTGGCCAGGCCCAGGCGAGGGATCTCAATAGCCGGGCAGCGATCCATCACCACATTTAACCCGGCATCCCGTGCCAGTACTGCCGCTTGCTCATTAA                         <  1:199191/133‑1                                                                                                                                                       TCCCCGGAAGGTTTTTGCCTTCCGGGGATTTTTTATTTGGCCAGGCCCAGGCGAGGGATCTCAATAGCCGGGCAGCGATCCATCACCACATTTAACCCGGCATCCCGTGCCAGTACTGCCGCTTGCTCATTAA                         >  2:199191/1‑133                                                                                                                                                             GAAGGTTTTTGCCTTCCGGGGATTTTTTATTTGGCCAGGCCCAGGCGAGGGATCTCAATAGCCGGGCAGCGATCCATCACCACATTTAACCCGGCATCCCGTGCCAGTACTGCCGCTTGCTCATTAATCACCCCCAGTTGCATCCAGAG   <  1:319643/149‑1                                                                                                                                                              AAGGTTTTGGCTTTCCGGGGATTTTTTATTTGTCCAGGCCCAGGCGAGGGATCTCAATAGCCGGGCAGCGATCCATCACCACATTTAACCCGGCATCCCGTGCCAGTACTGCCGCTTGCTCATTAATCACCCCCAGTTGCATCCAGAGA  <  1:277075/149‑1                                                                                                                                                                                                                                                                                                                    CTATTGCCATTGGCGCGAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/1028214‑1028374 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatccccggaaggTTTTTGCCTTCCGGGGATTTTTTATTTGGCCAGGCCCAGGCGAGGGATCTCAATAGCCGGGCAGCGATCCATCACCACATTTAACCCGGCATCCCGTGCCAGTACTGCCGCTTGCTCATTAATCACCCCCAGTTGCATCCAGAGA  <  NC_000913_3_hsa_tpiA/1028380‑1028236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.