New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1028374	NA (NA)	6 (0.200)	5/252	3.5	NA	noncoding (9/24 nt)	REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_hsa_tpiA	= 1028380	NA (NA)					noncoding (15/24 nt)	REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GCGAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAG  >  NC_000913_3_hsa_tpiA/1028228‑1028516                                                                                                                                                   |                                                                                                                                               gcgAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCa                                                                                                                                              >  2:29273/1‑149 (MQ=255)         tctctGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGACAAATAAAAAATCCCCGGAAAGCCAAAACCtt                                                                                                                                      >  1:277075/1‑149 (MQ=255)          ctctGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTc                                                                                                                                     >  1:319643/1‑149 (MQ=255)                          gggTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg                                                                                                                     >  1:57970/1‑149 (MQ=255)                           ggTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAggg                                                                                                                    >  2:586987/1‑149 (MQ=255)                             tGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGAt                                                                                                                  >  2:56106/1‑149 (MQ=255)                              gATTAAGGAGCAAGCGGCAGTACTGGCACGGGATTCCGGGTTAAATGTGGTGATGCATCGCTGGCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGAtt                                                                                                                 <  1:533370/149‑1 (MQ=255)                                ttAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGa                                                                                                                               >  1:199191/1‑133 (MQ=255)                                ttAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGa                                                                                                                               <  2:199191/133‑1 (MQ=255)                                   aTGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTa                                                                                                            <  1:29273/149‑1 (MQ=255)                                   aTGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTa                                                                                                            >  1:420826/1‑149 (MQ=255)                                      aGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTAccc                                                                                                         >  2:257555/1‑147 (MQ=255)                                              gCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCgg                                                                                                 <  2:38135/149‑1 (MQ=255)                                                aGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCgggg                                                                                               <  2:544564/149‑1 (MQ=255)                                                  tACTGGCACGGTAGGCCGGGTAAAATGTTGTGACGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCTGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGcc                                                                                             <  2:302362/149‑1 (MQ=255)                                                     tGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTgg                                                                                          >  1:492788/1‑149 (MQ=255)                                                       gCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAg                                                                                        >  1:429317/1‑149 (MQ=255)                                                                 ccGGGGTAAATGTGGAGGTGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCAAGGAAGGAAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCgg                                                                              <  2:429317/149‑1 (MQ=255)                                                                  cGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGCGATACCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCACAAACCTTCCGGGGATTTGTTCAGGGATTAGATCTGAGGTCGGAGGGCCTGGGGTTGTTTGAGGa                                                                             >  2:571713/1‑149 (MQ=255)                                                                       tAAAGGTTGTGACAGATGTCTGCCCGTCTATTGAGATCCCTCGCATGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTc                                                                        <  2:543183/149‑1 (MQ=255)                                                                         aaTGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTg                                                                      >  1:499646/1‑149 (MQ=255)                                                                         aaTGTGGGGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGGAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAAGCGGGGCCTGGAGTTGTTTGCGGATGGTCTg                                                                      >  2:310526/1‑149 (MQ=255)                                                                          aTGTGGTGATGGATCGCTTCCCGGCTATTTAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgc                                                                     <  2:57015/149‑1 (MQ=255)                                                                          aTGTGGAGACGGAACGCCACCCGGCCAATGAGATCCCTCGCCTAGGCCTGGCCAAATAAAAAATCCCCAGAAAACAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACCCGGGGCCTGGAGTTGTTTGCGGATGGTCTgc                                                                     <  2:253421/149‑1 (MQ=255)                                                                           tgtgGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgcg                                                                    >  1:124338/1‑149 (MQ=255)                                                                               gtgATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAg                                                                >  2:294673/1‑149 (MQ=255)                                                                                      aTCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATcc                                                         >  1:366940/1‑149 (MQ=255)                                                                                            ggccGGCTATTGAGATCCCTCGCCTGGGCCTGGACAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCatggat                                                   <  2:4707/147‑1 (MQ=255)                                                                                            gCCGGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCatggat                                                   <  2:148980/149‑1 (MQ=255)                                                                                             cccGGCTAGTGAGAGCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAACACCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCatggatg                                                  <  2:520061/149‑1 (MQ=255)                                                                                              ccGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGa                                                                                         >  2:267781/1‑109 (MQ=255)                                                                                              ccGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGa                                                                                         <  1:267781/109‑1 (MQ=255)                                                                                              ccGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCatggatgg                                                 >  2:389376/1‑149 (MQ=255)                                                                                              ccGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCGCATCCatggctgg                                                 >  2:213261/1‑149 (MQ=255)                                                                                              ccGGCTATTGAGACCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCatggatgg                                                 <  2:420826/149‑1 (MQ=255)                                                                                                 gCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTg                                              <  1:152673/149‑1 (MQ=255)                                                                                                    aTTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGTCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCAATGCATGGCCGTTc                                           >  2:298430/1‑149 (MQ=255)                                                                                                        agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGa                                       >  1:255882/1‑149 (MQ=255)                                                                                                        agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAAGCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGa                                       <  1:79991/149‑1 (MQ=255)                                                                                                          aTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATg                                     >  1:560894/1‑149 (MQ=255)                                                                                                           tCCCTCGCCTGGGGCGGGCCAAATAAAAAAGCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGt                                    <  2:57970/149‑1 (MQ=255)                                                                                                               tCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc                                                                                                                        >  1:451078/1‑61 (MQ=255)                                                                                                               tCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc                                                                                                                        <  2:451078/61‑1 (MQ=255)                                                                                                                    tgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGc                           <  2:473730/149‑1 (MQ=255)                                                                                                                       gcctggCCAAATAAAAAAGCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAAt                        <  1:207143/149‑1 (MQ=255)                                                                                                                            gCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGCAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATCGATGGCTGTTCAGGATGTTCATCCTCCAATTCGCt                   >  2:363535/1‑149 (MQ=255)                                                                                                                                  tAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAg             >  1:258748/1‑149 (MQ=255)                                                                                                                                    aaaaaTCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCt           <  2:46211/149‑1 (MQ=255)                                                                                                                                        aTCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGAATGGCTGTTCAGGATGTTCAGCCTGCAATTCGCTACTTAGCTGGGc       >  1:166925/1‑149 (MQ=255)                                                                                                                                           cccGGAAGGCAAAAACCTTCCGGGGATTTGTTCGGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGCTGGCGTGTCAGGGTGTTCATCCTGCAATTCGCTAATTAGCTGGGCTTc    >  1:263735/1‑149 (MQ=255)                                                                                                                                            ccGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCCATTCGCTACTTAGCTGGGCGTCa   >  2:479907/1‑149 (MQ=255)                                                                                                                                            ccGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCa   >  1:272100/1‑149 (MQ=255)                                                                                                                                             cGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGTTAACGCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAg  >  1:441087/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                               GCGAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAG  >  NC_000913_3_hsa_tpiA/1028228‑1028516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.